Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_H01
         (537 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical p...    32   0.30 
AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synapt...    32   0.30 
U40415-5|AAK39251.1|  655|Caenorhabditis elegans Hypothetical pr...    31   0.69 
AL023835-10|CAA19494.2|  691|Caenorhabditis elegans Hypothetical...    30   1.2  
Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical pr...    28   3.7  
Z81112-6|CAB03277.1|  673|Caenorhabditis elegans Hypothetical pr...    27   6.5  
Z77136-10|CAB00887.1|  673|Caenorhabditis elegans Hypothetical p...    27   6.5  

>U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical
           protein F41G3.12 protein.
          Length = 1483

 Score = 31.9 bits (69), Expect = 0.30
 Identities = 13/21 (61%), Positives = 15/21 (71%)
 Frame = +3

Query: 417 TPEYNPVCGSDHKTYKNQGRL 479
           T E+  VCGSD KTY N+ RL
Sbjct: 469 TDEFKEVCGSDGKTYSNECRL 489



 Score = 29.9 bits (64), Expect = 1.2
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +3

Query: 393 KCAENCISTPEYNPVCGSDHKTYKNQGRLFVPNCDQ 500
           KC+E C     +  VCG+D KTY N+  L +  C +
Sbjct: 318 KCSEQCTMNSAH--VCGTDGKTYLNECFLKLAACKE 351


>AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synaptic
           protein) homologfamily member protein.
          Length = 1473

 Score = 31.9 bits (69), Expect = 0.30
 Identities = 13/21 (61%), Positives = 15/21 (71%)
 Frame = +3

Query: 417 TPEYNPVCGSDHKTYKNQGRL 479
           T E+  VCGSD KTY N+ RL
Sbjct: 477 TDEFKEVCGSDGKTYSNECRL 497



 Score = 29.9 bits (64), Expect = 1.2
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +3

Query: 393 KCAENCISTPEYNPVCGSDHKTYKNQGRLFVPNCDQ 500
           KC+E C     +  VCG+D KTY N+  L +  C +
Sbjct: 326 KCSEQCTMNSAH--VCGTDGKTYLNECFLKLAACKE 359


>U40415-5|AAK39251.1|  655|Caenorhabditis elegans Hypothetical
           protein K02G10.5 protein.
          Length = 655

 Score = 30.7 bits (66), Expect = 0.69
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 387 IEKCAENCISTPEYNPVCGSDHK 455
           +E C+ENC     +NPVC  D K
Sbjct: 442 LETCSENCHCDSFFNPVCSEDSK 464


>AL023835-10|CAA19494.2|  691|Caenorhabditis elegans Hypothetical
           protein Y37A1B.11 protein.
          Length = 691

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 13/51 (25%), Positives = 27/51 (52%)
 Frame = +1

Query: 322 KHRYQVKGKHQLLALVEHHDKQLRNARRIAFQHQNTTPCVVAIIKLTKTRE 474
           + R++ + +H   AL +H  ++L   +R A     +  CV+++IK   + E
Sbjct: 81  EQRHRRRRRHNETALEDHLSEKLSREKRAAAHIMRSRKCVISVIKKMSSME 131


>Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical
           protein F29G6.1 protein.
          Length = 1170

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +3

Query: 378 RQTIEKCAENCISTPEYNPVCGSDHKTYKN 467
           R + + C  NC +T E++PVC ++   Y+N
Sbjct: 109 RCSSKDCNHNCTNT-EFDPVCDTNGSVYRN 137


>Z81112-6|CAB03277.1|  673|Caenorhabditis elegans Hypothetical
           protein ZC376.3 protein.
          Length = 673

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
 Frame = +3

Query: 402 ENCISTPEYNPVCGSD-HKTYKN 467
           +  + T EY P C SD  KTYKN
Sbjct: 73  DGILETKEYKPACMSDAKKTYKN 95


>Z77136-10|CAB00887.1|  673|Caenorhabditis elegans Hypothetical
           protein ZC376.3 protein.
          Length = 673

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
 Frame = +3

Query: 402 ENCISTPEYNPVCGSD-HKTYKN 467
           +  + T EY P C SD  KTYKN
Sbjct: 73  DGILETKEYKPACMSDAKKTYKN 95


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,148,698
Number of Sequences: 27780
Number of extensions: 288798
Number of successful extensions: 726
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 726
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1070714938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)