Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_H01
         (537 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   3.5  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   4.6  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   4.6  
DQ435335-1|ABD92650.1|  135|Apis mellifera OBP18 protein.              21   8.0  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   8.0  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 11/33 (33%), Positives = 13/33 (39%)
 Frame = +3

Query: 396 CAENCISTPEYNPVCGSDHKTYKNQGRLFVPNC 494
           C   C     + PVC S+ K Y N   L    C
Sbjct: 106 CMRKC--PRRHRPVCASNGKIYANHCELHRAAC 136


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 7/15 (46%), Positives = 8/15 (53%)
 Frame = +3

Query: 408 CISTPEYNPVCGSDH 452
           C+    Y PVC  DH
Sbjct: 149 CVPFTTYTPVCEYDH 163


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +3

Query: 165 NLFIDKNGWNKSQDGNRPEW 224
           N+F+DK G++     N  +W
Sbjct: 198 NIFLDKKGFHMDGYTNNSKW 217


>DQ435335-1|ABD92650.1|  135|Apis mellifera OBP18 protein.
          Length = 135

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 150 IENNANLFIDKNGWNK 197
           I   A +F+D+NG NK
Sbjct: 84  IREIAEIFLDENGVNK 99


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -2

Query: 194 VPSVLVNK*IRVVFYLP 144
           +P +L+N    +VFY+P
Sbjct: 222 LPCILINSVALLVFYVP 238


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,657
Number of Sequences: 438
Number of extensions: 3929
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15213684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)