Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_G24
         (551 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27392| Best HMM Match : Kazal_1 (HMM E-Value=0.00072)               45   5e-05
SB_45722| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   3e-04
SB_56344| Best HMM Match : Kazal_2 (HMM E-Value=1.5e-09)               38   0.004
SB_23132| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.007
SB_58159| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.017
SB_20364| Best HMM Match : Thyroglobulin_1 (HMM E-Value=1.8e-16)       33   0.21 
SB_59779| Best HMM Match : Thyroglobulin_1 (HMM E-Value=1.2e-26)       31   0.47 
SB_15709| Best HMM Match : CAP_GLY (HMM E-Value=0)                     31   0.83 
SB_42859| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_35938| Best HMM Match : BTB (HMM E-Value=8.5e-24)                   29   1.9  
SB_26577| Best HMM Match : Vicilin_N (HMM E-Value=1.5)                 29   2.5  
SB_11910| Best HMM Match : Kelch_1 (HMM E-Value=0)                     29   2.5  
SB_11738| Best HMM Match : SH3_2 (HMM E-Value=3.7e-32)                 29   3.3  
SB_18961| Best HMM Match : zf-U1 (HMM E-Value=0.07)                    28   4.4  
SB_36847| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.4  
SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.4  
SB_29063| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.7  

>SB_27392| Best HMM Match : Kazal_1 (HMM E-Value=0.00072)
          Length = 196

 Score = 44.8 bits (101), Expect = 5e-05
 Identities = 31/117 (26%), Positives = 53/117 (45%), Gaps = 1/117 (0%)
 Frame = +3

Query: 99  REMPECSENEMSDFPRRMRDWLFNIMRDLAERRELTPHYLRMEREAESNLTRRWTNA-AI 275
           + + EC+ + +  F  R  +W+      ++ RR +  +Y   E E   NL        A 
Sbjct: 69  QNVSECARDNLLQFGERYLEWIL-----ISRRRLVNRYYQVKESEKGHNLPPDMRKELAQ 123

Query: 276 WKWCDLDAHDNDRFVSRHELFPIRAPLMSLEHCIAPFLDQCDADEDHRITLAEWGKC 446
           W++  +D  + D  +S  E+  I  PL+  E CI  F+  CD +++  I   EW  C
Sbjct: 124 WEFDRVD-FNRDGVLSGREINSIIGPLLFHERCIYGFVMSCDVNKNSVIDKQEWLLC 179


>SB_45722| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1080

 Score = 41.9 bits (94), Expect = 3e-04
 Identities = 30/113 (26%), Positives = 50/113 (44%), Gaps = 1/113 (0%)
 Frame = +3

Query: 111 ECSENEMSDFPRRMRDWLFNIMRDLAERRELTPHYLRMEREA-ESNLTRRWTNAAIWKWC 287
           +C    + DF  R  +WL    ++       + H +   R A E  L        +W++ 
Sbjct: 679 QCPVERLLDFHSRYLEWLLVAYKE-------SKHAVMDSRVALEGILDEEIKRIIMWEFD 731

Query: 288 DLDAHDNDRFVSRHELFPIRAPLMSLEHCIAPFLDQCDADEDHRITLAEWGKC 446
           + DA+ ND+ +  HE   +++ +   E C+  F+D CD D    IT  EW  C
Sbjct: 732 NQDANRNDQ-LDEHE---VKSMIDLREPCMVGFMDACDFDGHPGITRHEWNAC 780


>SB_56344| Best HMM Match : Kazal_2 (HMM E-Value=1.5e-09)
          Length = 217

 Score = 38.3 bits (85), Expect = 0.004
 Identities = 33/116 (28%), Positives = 50/116 (43%), Gaps = 1/116 (0%)
 Frame = +3

Query: 123 NEMSDFPRRMRDWLFNIMRDLAERRELTPHYLRMEREAESNLTRRWTNAAIWKW-CDLDA 299
           + MS F  R  +W       +A+ +    +Y    R  +  + ++    AI KW  D + 
Sbjct: 103 DHMSQFRDRYLEWAH-----VAKEQTKDQNYTLTRRIHDMTMRQK---VAIAKWEFDRND 154

Query: 300 HDNDRFVSRHELFPIRAPLMSLEHCIAPFLDQCDADEDHRITLAEWGKCLQLDEYE 467
            D D  +   E+  I A +M  E C A FL  CD +    I+ +EW  C  L E E
Sbjct: 155 LDKDNALEGAEIDNILA-MMIYEPCAAGFLWSCDLNRKQGISRSEWDMCFTLAERE 209


>SB_23132| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 60

 Score = 37.5 bits (83), Expect = 0.007
 Identities = 19/57 (33%), Positives = 31/57 (54%)
 Frame = +3

Query: 276 WKWCDLDAHDNDRFVSRHELFPIRAPLMSLEHCIAPFLDQCDADEDHRITLAEWGKC 446
           W++ + DA+ ND+ +  HE   +++ +   E C+  F+D CD D    IT  EW  C
Sbjct: 1   WEFDNQDANRNDQ-LDEHE---VKSMIDLREPCMVGFMDACDFDGHPGITRHEWNAC 53


>SB_58159| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 443

 Score = 36.3 bits (80), Expect = 0.017
 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
 Frame = +3

Query: 276 WKWCDLDAHDNDRFVSRHELFPIRAPLMSLE-----HCIAPFLDQCDADEDHRITLAEWG 440
           WK+  LD++  DR ++  E F +    M  +      C    L  CD D+D+ ++L EW 
Sbjct: 373 WKFHQLDSN-RDRIINSREFFVVSMKKMLGKIKRGRKCSRKLLADCDFDKDNGLSLNEWS 431

Query: 441 KCL 449
            CL
Sbjct: 432 YCL 434


>SB_20364| Best HMM Match : Thyroglobulin_1 (HMM E-Value=1.8e-16)
          Length = 187

 Score = 32.7 bits (71), Expect = 0.21
 Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
 Frame = +3

Query: 273 IWKWCDLDAHDNDRFVSRHELFPIRAPLMSLEH---CIAPFLDQCDADEDHRITLAEWGK 443
           +WK+  LD +  D F+   EL           H   C   F+  CD ++D RI+  EW  
Sbjct: 50  MWKFNQLDTNA-DYFLEWSELHGFLRMSKKAIHPKKCSKTFVGYCDENQDQRISRNEWYA 108

Query: 444 CLQLDE 461
           C  + E
Sbjct: 109 CFGVQE 114


>SB_59779| Best HMM Match : Thyroglobulin_1 (HMM E-Value=1.2e-26)
          Length = 452

 Score = 31.5 bits (68), Expect = 0.47
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = +3

Query: 303 DNDRFVSRHELFPIRAPLMSLEHCIAPFLDQCDADEDHRITLAEWGKCLQL 455
           D D  +   EL  ++   +  E+CI  F ++CDA +D + +L E     QL
Sbjct: 34  DGDHVLGPEELAEVKE--IPNENCITQFFEKCDATKDGQFSLLESANASQL 82


>SB_15709| Best HMM Match : CAP_GLY (HMM E-Value=0)
          Length = 729

 Score = 30.7 bits (66), Expect = 0.83
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -3

Query: 111 PAFPCKSRSTRSARGGTAPRGTAPSGRGRGSAVGTPR 1
           PA P  S++T +AR    PRGT  +     + + +PR
Sbjct: 49  PATPSSSKTTSTARSTVKPRGTTSAASSAATGLVSPR 85


>SB_42859| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1370

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 22/55 (40%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
 Frame = -3

Query: 165  TASRACAAGSLTFRSRCTP---AFPCKSRS--TRSARGGTAPRGTAPSGRGRGSA 16
            T  R    G  T RS CTP   AF  +S +  TRS+  G APR +    +G  SA
Sbjct: 885  TEGRQPRPGLATLRSSCTPTSRAFALQSTACQTRSSARGCAPRISGGRRKGGSSA 939


>SB_35938| Best HMM Match : BTB (HMM E-Value=8.5e-24)
          Length = 467

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = -3

Query: 150 CAAGSLTFRSRCTPAFPCKSR-STRSARGGTAPRGTAPS 37
           C   S   R   TP  PCKS+ S+R    GT+P  T  S
Sbjct: 413 CTTTSSPIRFSSTPGPPCKSKSSSRGISSGTSPVSTNSS 451


>SB_26577| Best HMM Match : Vicilin_N (HMM E-Value=1.5)
          Length = 649

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +1

Query: 436 GANV-CNSMSTSWRTAATNSSMTCSMVL 516
           G+NV CNSMS +W    TN +M+   VL
Sbjct: 249 GSNVSCNSMSGAWGKKPTNRTMSTECVL 276


>SB_11910| Best HMM Match : Kelch_1 (HMM E-Value=0)
          Length = 456

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 270 AIWKWCDLDAHDNDRFVSRHELFPIRAPLMSL 365
           A+WKW + D H    FV+    + +R PLM+L
Sbjct: 70  AVWKWLNHDFHGRSMFVADIMQY-VRFPLMNL 100


>SB_11738| Best HMM Match : SH3_2 (HMM E-Value=3.7e-32)
          Length = 2436

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = +3

Query: 99  REMPECSENEMSDFPRRMRDWLFNIMRDLAERRELTPHYLRMEREAE 239
           R++ E S +E  DF RR+R    N + DL E++      LR++  A+
Sbjct: 137 RQLVEKSRDETGDFERRLR----NEIHDLKEQKRKAEESLRLKTAAD 179


>SB_18961| Best HMM Match : zf-U1 (HMM E-Value=0.07)
          Length = 844

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = -3

Query: 111 PAFPCKSRSTRS-ARGGTAPRGTAPSGRGRGSAVGT 7
           P  P   R  R   RGG+A RG   +GRGRG   G+
Sbjct: 770 PVTPLARRGRRGRGRGGSASRGKG-AGRGRGKGRGS 804


>SB_36847| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 344

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 35/149 (23%), Positives = 57/149 (38%), Gaps = 7/149 (4%)
 Frame = +3

Query: 33  DHSELCRGAQYH--HVQIEYYGTCREMPECSENEMSDFPRRMRDWLFNIMRDLAE----R 194
           +H EL R A  H   + I   G C  +  C E +      RM +W+      LA     +
Sbjct: 102 NHCELHRIACVHTKKITIRSKGPCEVV--CYERDRDQMRGRMIEWMQMQEESLANAAGYQ 159

Query: 195 RELTPHYLRMEREAESNLT-RRWTNAAIWKWCDLDAHDNDRFVSRHELFPIRAPLMSLEH 371
           R L   +  +++  +  L  +  T    +     +  + D F++     P+   L     
Sbjct: 160 RVLKRFFDMVDKNKDGKLNLKELTELVKYNQTVAEIREADEFIN-----PVLQGL----- 209

Query: 372 CIAPFLDQCDADEDHRITLAEWGKCLQLD 458
           C    +   D DED  +T  E+ KCL  D
Sbjct: 210 CSDALISITDDDEDTELTFKEFRKCLDPD 238


>SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1926

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 19/51 (37%), Positives = 25/51 (49%)
 Frame = -2

Query: 286 HHFQMAALVQRRVRLDSASRSMRR*WGVSSRRSARSRIMLNSQSRMRRGKS 134
           H F+  +L + R R   +SRS  R  G S R   RSR   +S S   R +S
Sbjct: 628 HIFKPGSLRRSRSRTSLSSRSRSRDRGGSRRGKRRSRSRSSSYSSRSRSRS 678



 Score = 28.3 bits (60), Expect = 4.4
 Identities = 29/88 (32%), Positives = 35/88 (39%), Gaps = 5/88 (5%)
 Frame = -2

Query: 367 SRDMSGARIGNNSCRDTNLSLSCASRSH-----HFQMAALVQRRVRLDSASRSMRR*WGV 203
           SRD  G+R G    R  + S S  SRS        +     +RR R  S S S       
Sbjct: 650 SRDRGGSRRGKRRSRSRSSSYSSRSRSRSRSRDRGRGRKRSRRRSRSSSHSSSSLSRSRS 709

Query: 202 SSRRSARSRIMLNSQSRMRRGKSDISFS 119
            SR   R R    S+S  R+GK   S S
Sbjct: 710 RSRSRGRGRRRSRSRSSSRKGKRQRSRS 737


>SB_29063| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 218

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = -3

Query: 78  SARGGTAPRGTAPSGRGRGSAVGTPR 1
           S RGG   RG +  GRGRG   G  R
Sbjct: 35  SGRGGRGGRGGSGRGRGRGRGSGRGR 60


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,471,117
Number of Sequences: 59808
Number of extensions: 301949
Number of successful extensions: 1201
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1092
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1195
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1276425465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)