Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_G24
         (551 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g08580.1 68418.m01021 calcium-binding EF hand family protein ...    33   0.096
At5g13480.1 68418.m01554 WD-40 repeat family protein similar to ...    31   0.51 
At5g57660.1 68418.m07205 zinc finger (B-box type) family protein...    30   0.89 
At5g24930.1 68418.m02952 zinc finger (B-box type) family protein...    30   1.2  
At3g02380.1 68416.m00223 zinc finger protein CONSTANS-LIKE 2 (CO...    30   1.2  
At3g13490.1 68416.m01697 tRNA synthetase class II (D, K and N) f...    29   2.7  
At5g37720.1 68418.m04541 RNA and export factor-binding protein, ...    28   3.6  
At5g24280.1 68418.m02856 expressed protein ; expression supporte...    28   4.8  
At3g59870.1 68416.m06681 expressed protein hypothetical protein ...    27   6.3  
At5g22010.1 68418.m02561 AAA-type ATPase family protein / BRCT d...    27   8.3  
At4g29310.1 68417.m04190 expressed protein                             27   8.3  

>At5g08580.1 68418.m01021 calcium-binding EF hand family protein
           contains INTERPRO:IPR002048 calcium-binding EF-hand
           domain
          Length = 391

 Score = 33.5 bits (73), Expect = 0.096
 Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 5/53 (9%)
 Frame = +3

Query: 291 LDAHDNDRFVSRHELFPIRAPLMSLEHCIAP-----FLDQCDADEDHRITLAE 434
           LD +D D ++S  EL PI + +   EH  A       + Q D+D+D R+TLAE
Sbjct: 311 LDKND-DGYLSDVELLPIISKIHPTEHYYAKQQADYIISQADSDKDRRLTLAE 362


>At5g13480.1 68418.m01554 WD-40 repeat family protein similar to
           WD-repeat protein WDC146 (SP:Q9C0J8|) {Homo sapiens};
           contains 3 weak Pfam PF00400: WD domain, G-beta repeats;
          Length = 711

 Score = 31.1 bits (67), Expect = 0.51
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +2

Query: 26  LPRPLGAVPRGAVPPRADRVLRDLQGNAGVQRERNVRLPAAH 151
           LPRP+   P G +PP +  +   + G+ G+Q   N ++  +H
Sbjct: 608 LPRPMQMPPHGHMPPPSMPMSHQMPGSMGMQGGMNPQMSQSH 649


>At5g57660.1 68418.m07205 zinc finger (B-box type) family protein
           contains Pfam domain, PF00643: B-box zinc finger
          Length = 355

 Score = 30.3 bits (65), Expect = 0.89
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = +3

Query: 231 EAESNLTRRWTNAAIWKWCDLDAHDNDRFVSRHELFPIRAPLMSLEHCIA 380
           +A + +T +   AA+   CD D H  +   SRHE  P+     S E  +A
Sbjct: 66  QAPAAVTCKADAAALCVSCDADIHSANPLASRHERVPVETFFDSAETAVA 115


>At5g24930.1 68418.m02952 zinc finger (B-box type) family protein
           similar to CONSTANS-like protein 1 GI:4091804 from
           [Malus x domestica]
          Length = 406

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 7/63 (11%)
 Frame = +3

Query: 231 EAESNLTRRWTNAAIWKWCDLDAHDNDRFVSRHELFPIRAPLM-------SLEHCIAPFL 389
           +A +++T +   AA+   CD D H  +    RHE  P+  P         S++H    FL
Sbjct: 98  QAPAHVTCKADAAALCVTCDRDIHSANPLARRHERVPV-TPFYDSVSSDGSVKHTAVNFL 156

Query: 390 DQC 398
           D C
Sbjct: 157 DDC 159


>At3g02380.1 68416.m00223 zinc finger protein CONSTANS-LIKE 2 (COL2)
           identical to putative flowering-time gene CONSTANS
           (COL2) GB:AAB67879 GI:1507699 SP:Q96502 (Arabidopsis
           thaliana)
          Length = 347

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
 Frame = +3

Query: 267 AAIWKWCDLDAHDNDRFVSRHELFPIRAPLMSLEHC--IAPFLDQCDADEDHRITLAEW 437
           A++   CD + H  +    RH+  PI  PL S   C  +AP     D DED R  +A W
Sbjct: 76  ASLCTACDAEIHSANPLARRHQRVPI-LPL-SANSCSSMAPSETDADNDEDDR-EVASW 131


>At3g13490.1 68416.m01697 tRNA synthetase class II (D, K and N)
           family protein similar to SP|Q9RHV9 Lysyl-tRNA
           synthetase (EC 6.1.1.6) (Lysine--tRNA ligase) {Bacillus
           stearothermophilus}; contains Pfam profile: PF00152 tRNA
           synthetases class II (D, K and N)
          Length = 602

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -3

Query: 114 TPAFPCKSRSTRSARGGTAPRGTAPSGRGRGSA 16
           +PA  C S ++ S+   T    + PSGR R SA
Sbjct: 40  SPALRCASAASSSSSSATTAETSKPSGRNRRSA 72


>At5g37720.1 68418.m04541 RNA and export factor-binding protein,
           putative transcriptional coactivator ALY, Mus musculus,
           EMBL:MMU89876
          Length = 288

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 15/38 (39%), Positives = 16/38 (42%)
 Frame = -3

Query: 123 SRCTPAFPCKSRSTRSARGGTAPRGTAPSGRGRGSAVG 10
           SR  P    +    R  RGG   RG    GRGRG   G
Sbjct: 223 SRRLPIHNQQGGGMRGGRGGFRARGRGNGGRGRGGGRG 260


>At5g24280.1 68418.m02856 expressed protein ; expression supported by
            MPSS
          Length = 1634

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 13/43 (30%), Positives = 19/43 (44%)
 Frame = +3

Query: 354  LMSLEHCIAPFLDQCDADEDHRITLAEWGKCLQLDEYELEDRC 482
            LM +        ++ + DE+ R+ L E  KCLQ      E  C
Sbjct: 1287 LMDMAQYTEDLKEKINIDEERRVELEERLKCLQAQREHAEQEC 1329


>At3g59870.1 68416.m06681 expressed protein hypothetical protein
           F6E13.7 - Arabidopsis thaliana, PIR:T00674
          Length = 288

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = -2

Query: 325 RDTNLSLSCASRSHHFQMAALVQRRVRLDSASRSM 221
           R ++ S SC+S+S  FQ+ ++ +RR R  S S  M
Sbjct: 33  RRSSSSTSCSSQSQSFQLFSVRRRRSRSSSPSIPM 67


>At5g22010.1 68418.m02561 AAA-type ATPase family protein / BRCT
           domain-containing protein contains Pfam profiles:
           PF00533 BRCA1 C Terminus (BRCT) domain, PF00004 ATPase
           family associated with various cellular activities (AAA)
          Length = 956

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -3

Query: 90  RSTRSARGGTAPRGTAPSGRGRGSAVG 10
           +S    RGG A  G +  GRGRG   G
Sbjct: 154 KSAGRGRGGRAAPGASTGGRGRGGGRG 180


>At4g29310.1 68417.m04190 expressed protein
          Length = 424

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -3

Query: 111 PAFPCKSRSTRSARGGTAPRGTAPSGRG 28
           P F CK  S R+ R  + P G   S RG
Sbjct: 186 PVFSCKFSSDRNGRSRSLPSGFTYSSRG 213


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,290,209
Number of Sequences: 28952
Number of extensions: 193990
Number of successful extensions: 722
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 722
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1043173136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)