Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_G21
(544 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_162| Best HMM Match : Extensin_2 (HMM E-Value=0.79) 29 3.2
SB_17658| Best HMM Match : GAS2 (HMM E-Value=6.9e-09) 29 3.2
SB_13995| Best HMM Match : ASC (HMM E-Value=0.0034) 29 3.2
SB_44732| Best HMM Match : TSP_1 (HMM E-Value=0) 27 7.5
SB_42661| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.5
SB_18957| Best HMM Match : zf-TAZ (HMM E-Value=3.7) 27 7.5
SB_46562| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.5
SB_16363| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.5
>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2870
Score = 29.9 bits (64), Expect = 1.4
Identities = 24/73 (32%), Positives = 29/73 (39%), Gaps = 1/73 (1%)
Frame = +3
Query: 171 CTEAETDCPAGTHI-TAKGLCPSQQHRGVECCHSVLRKINTCRSHGGECMDRCPENLTYK 347
C+E CP K CPS ECC +VL + +SH C C E+
Sbjct: 1304 CSEHSNACPQECSTDNCKPSCPS------ECCLTVLTPLKENKSHQEGCPAVCSESC--- 1354
Query: 348 NADDCNIKNKICC 386
DC IK CC
Sbjct: 1355 -KPDCPIK---CC 1363
Score = 29.1 bits (62), Expect = 2.5
Identities = 17/52 (32%), Positives = 20/52 (38%)
Frame = +3
Query: 171 CTEAETDCPAGTHITAKGLCPSQQHRGVECCHSVLRKINTCRSHGGECMDRC 326
C + CPA K CP ECC +VL+ I R H C C
Sbjct: 1246 CLKDARGCPATCVEDCKPGCPP------ECCFAVLKPIQENREHSQSCPKIC 1291
>SB_162| Best HMM Match : Extensin_2 (HMM E-Value=0.79)
Length = 820
Score = 28.7 bits (61), Expect = 3.2
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = -2
Query: 267 NDNILRPYAVDLDKDLSQ*CEYQPDSPFQLRYTSRRTHYKVVRR 136
+D L+P VD +K++++ CE Q SP RR + +R+
Sbjct: 688 SDQALKPNNVDENKNITRDCELQMKSPSATSLEDRRQEEEELRQ 731
>SB_17658| Best HMM Match : GAS2 (HMM E-Value=6.9e-09)
Length = 959
Score = 28.7 bits (61), Expect = 3.2
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = -2
Query: 267 NDNILRPYAVDLDKDLSQ*CEYQPDSPFQLRYTSRRTHYKVVRR 136
+D L+P VD +K++++ CE Q SP RR + +R+
Sbjct: 827 SDQALKPNNVDENKNITRDCELQMKSPSATSLEDRRQEEEELRQ 870
>SB_13995| Best HMM Match : ASC (HMM E-Value=0.0034)
Length = 610
Score = 28.7 bits (61), Expect = 3.2
Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = +3
Query: 273 LRKINTCRSHGG-ECMDRCPENLTYKNA 353
L ++N GG +C+++CP+ TYK A
Sbjct: 104 LNRVNMMYQEGGLKCLEKCPQPCTYKFA 131
>SB_44732| Best HMM Match : TSP_1 (HMM E-Value=0)
Length = 675
Score = 27.5 bits (58), Expect = 7.5
Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Frame = +3
Query: 252 VECCHSVLRKINTCRSHGGECMDRC-PENLTYKNADDC 362
V C V+R++ TC + G C D PE + DC
Sbjct: 578 VTCGEGVVRRVVTCSAGGNRCQDDTKPEVVKLCELPDC 615
>SB_42661| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1717
Score = 27.5 bits (58), Expect = 7.5
Identities = 19/75 (25%), Positives = 28/75 (37%), Gaps = 2/75 (2%)
Frame = +3
Query: 144 QPCNAFGGKCTEA--ETDCPAGTHITAKGLCPSQQHRGVECCHSVLRKINTCRSHGGECM 317
Q C + G +A + DCP + +G C + R +C + G +C
Sbjct: 1573 QKCECYPGWAGDACDKLDCPGSPPCSGQGECSNTNPRRCQCFP---------KWGGEKCE 1623
Query: 318 DRCPENLTYKNADDC 362
C Y NA DC
Sbjct: 1624 IPCLNGYNYGNASDC 1638
>SB_18957| Best HMM Match : zf-TAZ (HMM E-Value=3.7)
Length = 117
Score = 27.5 bits (58), Expect = 7.5
Identities = 20/76 (26%), Positives = 35/76 (46%)
Frame = +3
Query: 87 INQSNGVIEPSKATLVYDEQPCNAFGGKCTEAETDCPAGTHITAKGLCPSQQHRGVECCH 266
+N +I + + +V+D+Q GG+C A D +H G C + H G +C
Sbjct: 11 VNGGQWLIAQAASVIVHDDQCVIVHGGQCMIAHGDRCTVSH---SGRC-TVAHGG-QCV- 64
Query: 267 SVLRKINTCRSHGGEC 314
++ +HGG+C
Sbjct: 65 -IVHGSQCVIAHGGQC 79
>SB_46562| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 280
Score = 27.5 bits (58), Expect = 7.5
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = -1
Query: 91 LIRKTHRKHTKNGRRKH 41
LIR THRKH KN + H
Sbjct: 139 LIRSTHRKHCKNEKCTH 155
>SB_16363| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 709
Score = 27.5 bits (58), Expect = 7.5
Identities = 27/107 (25%), Positives = 44/107 (41%), Gaps = 10/107 (9%)
Frame = +3
Query: 99 NGVIEPSKATLVYDEQPCNAFGGKCTEAETDCPAGTHITAKGLC-PSQQHRGVECCHSVL 275
N +IE ++ DE C A GG C P +T C PSQ C V
Sbjct: 436 NRIIEGNEQCDCGDENSCKAEGGCCN--PPGHPQACRLTLAATCSPSQGPCCGRDCRYVG 493
Query: 276 RKINTCRSHGGECMDR---------CPENLTYKNADDCNIKNKICCI 389
I +CR+ +C+D+ CP+++ + C+ ++C +
Sbjct: 494 NDI-SCRNK-TDCLDKAMCSGSSVECPKSVYQPDNTVCDKGRRVCSV 538
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,793,858
Number of Sequences: 59808
Number of extensions: 275764
Number of successful extensions: 730
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 727
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1239956166
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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