Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_G20
         (456 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1539.06 |||acyl-coenzyme A binding protein |Schizosaccharomy...    89   3e-19
SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|...    30   0.15 
SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr 1|||M...    26   3.1  
SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha...    25   4.2  
SPAC22E12.14c |sck2||serine/threonine protein kinase Sck2|Schizo...    25   4.2  
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa...    25   7.3  
SPCC191.01 ||SPCC417.13|sequence orphan|Schizosaccharomyces pomb...    25   7.3  
SPCC4F11.04c |||mannosyltransferase complex subunit |Schizosacch...    24   9.6  

>SPBC1539.06 |||acyl-coenzyme A binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 87

 Score = 89.0 bits (211), Expect = 3e-19
 Identities = 43/81 (53%), Positives = 58/81 (71%)
 Frame = +1

Query: 55  LQEQFDQAAANVRNLKSVPSDSDLLELYALFKQATSGDADPANRPGLLDLRGKAKFDAWH 234
           +   F+QAAA+V+ LK  P+  +LL+LYALFKQAT GD +   +PGLLDL+GK K++AW 
Sbjct: 1   MSSTFEQAAADVKELKETPNSDELLKLYALFKQATVGD-NNTEKPGLLDLKGKFKWNAWE 59

Query: 235 KKAGTSKEDAQKAYIAKVEGL 297
           +  G SKEDA   YI+ V+ L
Sbjct: 60  ELKGKSKEDAASEYISFVDEL 80


>SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 574

 Score = 30.3 bits (65), Expect = 0.15
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = +1

Query: 313 APIITLYIYYRRHLYYSRSIGTHRLLGRL--SLPTITNLFLEF 435
           API+  Y  +RR +++  S    RL  R+   +P IT +F+ F
Sbjct: 257 APILLSYYVWRRRIHFETSFNIIRLACRVIADIPQITLIFISF 299


>SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 342

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = +3

Query: 237 ESRHFKGRRPEGIHCEGRRSRPHRSGSNNNSIYLLPTSSL 356
           ++ HFKG  P+ +  E   S  H  G +   + +LP   L
Sbjct: 260 DTNHFKGNYPKEVILEAIDSPDHIPGPDAQWVTILPARKL 299


>SPAC8C9.06c |||mitochondrial translation regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 931

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 13/48 (27%), Positives = 25/48 (52%)
 Frame = +1

Query: 262 AQKAYIAKVEGLVRIDRAPIITLYIYYRRHLYYSRSIGTHRLLGRLSL 405
           + +AY A ++  +  +    I LY+   R L  +  +  +R+L RL+L
Sbjct: 497 SNQAYAALLDAYIEAEDTEKIELYLGKIRRLGITEDVSINRMLMRLAL 544


>SPAC22E12.14c |sck2||serine/threonine protein kinase
           Sck2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 646

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -2

Query: 209 PLKSRRPGRLAGSASPDVACLNRAYSSSKSLSLGT 105
           PLK   PGR  G++S D A ++R+ S   S  + T
Sbjct: 136 PLKWESPGRDIGTSSRDSANVSRSSSMMSSHPIPT 170


>SPCC18B5.03 |wee1||dual specificity protein kinase
           Wee1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 877

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +3

Query: 222 RCVA*ESRH-FKGRRPEGIHCEGRRSRPHRSGSNNNSIYLL 341
           RC A  +R+ F       IH +GR+  P +S +NN   + +
Sbjct: 488 RCPATPTRNPFAFENTVSIHMDGRQPSPIKSRNNNQMSFAM 528


>SPCC191.01 ||SPCC417.13|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 178

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +1

Query: 70  DQAAANVRNLKSVPSDSDLLELYALFKQATSGDAD 174
           DQ   NVR+  S P  + L+EL+    +A   DAD
Sbjct: 40  DQFFRNVRDTISEPKFTQLMELWLEKSRAEVPDAD 74


>SPCC4F11.04c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 345

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -3

Query: 328 ELLLEPDRCGRDLLPSQ 278
           E L+  DRC +D++PS+
Sbjct: 29  EFLMFADRCTKDIIPSE 45


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,804,303
Number of Sequences: 5004
Number of extensions: 35626
Number of successful extensions: 82
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)