Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_G20
         (456 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3091| Best HMM Match : No HMM Matches (HMM E-Value=.)               63   9e-11
SB_43987| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.6  
SB_32414| Best HMM Match : Osteopontin (HMM E-Value=2.4)               27   9.7  

>SB_3091| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 159

 Score = 63.3 bits (147), Expect = 9e-11
 Identities = 33/81 (40%), Positives = 49/81 (60%)
 Frame = +1

Query: 55  LQEQFDQAAANVRNLKSVPSDSDLLELYALFKQATSGDADPANRPGLLDLRGKAKFDAWH 234
           +Q+ F QA   VR+LK++  +  LL  Y LFKQAT G     +RPG  D+ GKAK+++WH
Sbjct: 13  VQDLFAQATDYVRSLKNLRDEQKLL-FYGLFKQATEGPCK-TSRPGFWDIVGKAKWESWH 70

Query: 235 KKAGTSKEDAQKAYIAKVEGL 297
           +     +E A K Y+ ++  L
Sbjct: 71  QHGKMPQEKAMKIYVQELFSL 91


>SB_43987| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 970

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 20/47 (42%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = -2

Query: 293 PSTFA-MYAFWASSFEVPAFLCHASNLALPLKSRRPGRLAGSASPDV 156
           PST    +  W +SFE+ A   HASN     K RR   L   A PDV
Sbjct: 66  PSTLGPRWTGWLNSFELYADDTHASNAT---KQRRRALLWHFAGPDV 109


>SB_32414| Best HMM Match : Osteopontin (HMM E-Value=2.4)
          Length = 777

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 14/26 (53%), Positives = 18/26 (69%)
 Frame = +3

Query: 252 KGRRPEGIHCEGRRSRPHRSGSNNNS 329
           KGRRP  +   GRRS+ HRS S N++
Sbjct: 414 KGRRPPRV---GRRSQRHRSKSLNST 436


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,452,141
Number of Sequences: 59808
Number of extensions: 275941
Number of successful extensions: 563
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 505
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 562
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 920703675
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)