Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_G20
(456 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g31812.1 68414.m03905 acyl-CoA binding protein / ACBP identic... 78 2e-15
At5g53470.1 68418.m06645 acyl-CoA binding protein, putative / AC... 43 9e-05
At4g24230.2 68417.m03478 acyl-CoA binding protein, putative / AC... 40 0.001
At4g24230.1 68417.m03477 acyl-CoA binding protein, putative / AC... 40 0.001
At3g05420.2 68416.m00594 acyl-CoA binding family protein similar... 30 0.85
At3g05420.1 68416.m00593 acyl-CoA binding family protein similar... 30 0.85
At4g23290.2 68417.m03357 protein kinase family protein contains ... 28 2.6
At4g23290.1 68417.m03356 protein kinase family protein contains ... 28 2.6
At3g07250.1 68416.m00863 nuclear transport factor 2 (NTF2) famil... 28 3.4
At5g03960.1 68418.m00376 calmodulin-binding family protein 27 4.5
At5g07040.1 68418.m00797 zinc finger (C3HC4-type RING finger) fa... 27 7.9
At1g26670.1 68414.m03249 vesical transport v-SNARE 12 (VTI12) / ... 27 7.9
>At1g31812.1 68414.m03905 acyl-CoA binding protein / ACBP identical
to acyl-CoA-binding protein (ACBP) [Arabidopsis
thaliana] SWISS-PROT:P57752
Length = 92
Score = 78.2 bits (184), Expect = 2e-15
Identities = 37/86 (43%), Positives = 54/86 (62%)
Frame = +1
Query: 49 MSLQEQFDQAAANVRNLKSVPSDSDLLELYALFKQATSGDADPANRPGLLDLRGKAKFDA 228
M L+E+F++ A V L +PS+ DLL LY L+KQA G D +RPG+ ++ +AK+DA
Sbjct: 1 MGLKEEFEEHAEKVNTLTELPSNEDLLILYGLYKQAKFGPVD-TSRPGMFSMKERAKWDA 59
Query: 229 WHKKAGTSKEDAQKAYIAKVEGLVRI 306
W G S E+A YI KV+ L+ +
Sbjct: 60 WKAVEGKSSEEAMNDYITKVKQLLEV 85
>At5g53470.1 68418.m06645 acyl-CoA binding protein, putative / ACBP,
putative similar to acyl-CoA binding protein 2
[Arabidopsis thaliana] gi|12039034|gb|AAG46057
Length = 338
Score = 43.2 bits (97), Expect = 9e-05
Identities = 28/77 (36%), Positives = 40/77 (51%)
Frame = +1
Query: 67 FDQAAANVRNLKSVPSDSDLLELYALFKQATSGDADPANRPGLLDLRGKAKFDAWHKKAG 246
F AAA+ R + V ++ L +LY L+K AT G A +P L + +AK+ AW K
Sbjct: 104 FVAAAASDRLSQKVSNELQL-QLYGLYKIATEGPC-TAPQPSALKMTARAKWQAWQKLGA 161
Query: 247 TSKEDAQKAYIAKVEGL 297
E+A + YI V L
Sbjct: 162 MPPEEAMEKYIDLVTQL 178
>At4g24230.2 68417.m03478 acyl-CoA binding protein, putative / ACBP,
putative contains similarity to acyl-CoA binding protein
2 [Arabidopsis thaliana] gi|12039034|gb|AAG46057
Length = 362
Score = 39.5 bits (88), Expect = 0.001
Identities = 20/54 (37%), Positives = 32/54 (59%)
Frame = +1
Query: 127 LELYALFKQATSGDADPANRPGLLDLRGKAKFDAWHKKAGTSKEDAQKAYIAKV 288
+EL+ L K AT G A +P + + +AK++AW K S+E+A + Y+A V
Sbjct: 257 MELFGLHKIATEGSCREA-QPMAVMISARAKWNAWQKLGNMSQEEAMEQYLALV 309
>At4g24230.1 68417.m03477 acyl-CoA binding protein, putative / ACBP,
putative contains similarity to acyl-CoA binding protein
2 [Arabidopsis thaliana] gi|12039034|gb|AAG46057
Length = 364
Score = 39.5 bits (88), Expect = 0.001
Identities = 20/54 (37%), Positives = 32/54 (59%)
Frame = +1
Query: 127 LELYALFKQATSGDADPANRPGLLDLRGKAKFDAWHKKAGTSKEDAQKAYIAKV 288
+EL+ L K AT G A +P + + +AK++AW K S+E+A + Y+A V
Sbjct: 257 MELFGLHKIATEGSCREA-QPMAVMISARAKWNAWQKLGNMSQEEAMEQYLALV 309
>At3g05420.2 68416.m00594 acyl-CoA binding family protein similar to
PIR|S68824|S68824 rngB protein, cytosolic (Dictyostelium
discoideum); contains Pfam profiles PF00887: Acyl CoA
binding protein, PF01344: Kelch motif
Length = 669
Score = 29.9 bits (64), Expect = 0.85
Identities = 21/74 (28%), Positives = 37/74 (50%)
Frame = +1
Query: 70 DQAAANVRNLKSVPSDSDLLELYALFKQATSGDADPANRPGLLDLRGKAKFDAWHKKAGT 249
D +A NV + P D+ LL LYAL++QAT G + +P ++K+ +W
Sbjct: 29 DSSAKNV--ISKFPDDTALL-LYALYQQATVGPCN-TPKPSAWRPVEQSKWKSWQGLGTM 84
Query: 250 SKEDAQKAYIAKVE 291
+A + ++ +E
Sbjct: 85 PSIEAMRLFVKILE 98
>At3g05420.1 68416.m00593 acyl-CoA binding family protein similar to
PIR|S68824|S68824 rngB protein, cytosolic (Dictyostelium
discoideum); contains Pfam profiles PF00887: Acyl CoA
binding protein, PF01344: Kelch motif
Length = 668
Score = 29.9 bits (64), Expect = 0.85
Identities = 21/74 (28%), Positives = 37/74 (50%)
Frame = +1
Query: 70 DQAAANVRNLKSVPSDSDLLELYALFKQATSGDADPANRPGLLDLRGKAKFDAWHKKAGT 249
D +A NV + P D+ LL LYAL++QAT G + +P ++K+ +W
Sbjct: 29 DSSAKNV--ISKFPDDTALL-LYALYQQATVGPCN-TPKPSAWRPVEQSKWKSWQGLGTM 84
Query: 250 SKEDAQKAYIAKVE 291
+A + ++ +E
Sbjct: 85 PSIEAMRLFVKILE 98
>At4g23290.2 68417.m03357 protein kinase family protein contains
Pfam domain PF00069: Protein kinase domain
Length = 690
Score = 28.3 bits (60), Expect = 2.6
Identities = 26/72 (36%), Positives = 33/72 (45%)
Frame = -2
Query: 290 STFAMYAFWASSFEVPAFLCHASNLALPLKSRRPGRLAGSASPDVACLNRAYSSSKSLSL 111
ST + +A S A+ AS SRRP R G+ASPD A + SS SL
Sbjct: 293 STVLLALGYAVSRRRKAYQSFASENGYFSVSRRPRRPYGTASPDDATDDLTASSG---SL 349
Query: 110 GTDFRFLTLAAA 75
DFR + A +
Sbjct: 350 RFDFRAIKAATS 361
>At4g23290.1 68417.m03356 protein kinase family protein contains
Pfam domain PF00069: Protein kinase domain
Length = 600
Score = 28.3 bits (60), Expect = 2.6
Identities = 26/72 (36%), Positives = 33/72 (45%)
Frame = -2
Query: 290 STFAMYAFWASSFEVPAFLCHASNLALPLKSRRPGRLAGSASPDVACLNRAYSSSKSLSL 111
ST + +A S A+ AS SRRP R G+ASPD A + SS SL
Sbjct: 203 STVLLALGYAVSRRRKAYQSFASENGYFSVSRRPRRPYGTASPDDATDDLTASSG---SL 259
Query: 110 GTDFRFLTLAAA 75
DFR + A +
Sbjct: 260 RFDFRAIKAATS 271
>At3g07250.1 68416.m00863 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain), PF02136: Nuclear
transport factor 2 (NTF2) domain
Length = 1294
Score = 27.9 bits (59), Expect = 3.4
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +1
Query: 181 NRPGLLDLRGKAKFDAWHKKAGTSKEDAQKAYIAKVEGLVRIDRA 315
NR G +RG FD W + SKE+ K + + EG +++D +
Sbjct: 849 NRYGSEQVRGTEAFDFWDWQWQKSKEEQSK--LQEEEGEIQVDHS 891
>At5g03960.1 68418.m00376 calmodulin-binding family protein
Length = 403
Score = 27.5 bits (58), Expect = 4.5
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +1
Query: 211 KAKFDAWHKKAGTSKEDAQKAYIAKVEGLVRIDR 312
K K + W A T KED + ++ K EG+++ DR
Sbjct: 197 KVKCNGWDSSALT-KEDIKAIWLRKQEGVIKRDR 229
>At5g07040.1 68418.m00797 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 159
Score = 26.6 bits (56), Expect = 7.9
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +2
Query: 122 TYSSCMLCSNKPRPAMLTLPIA 187
T ++C LC N P P+ L P++
Sbjct: 128 TSATCPLCRNSPAPSRLATPLS 149
>At1g26670.1 68414.m03249 vesical transport v-SNARE 12 (VTI12) /
vesicle soluble NSF attachment protein receptor VTI1b
(VTI1B) receptor VTI1b identical to SP|Q9SEL5 Vesicle
transport v-SNARE 12 (AtVTI12) (Vesicle transport
v-SNARE protein VTI1b) (Vesicle soluble NSF attachment
protein receptor VTI1b) (AtVTI1b) {Arabidopsis thaliana}
Length = 222
Score = 26.6 bits (56), Expect = 7.9
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +1
Query: 118 SDLLELYALFKQATSGDADPANRPGLLD 201
SDL +L FK+ +S DA P++R L++
Sbjct: 80 SDLNQLKKEFKRVSSADAKPSSREELME 107
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,381,762
Number of Sequences: 28952
Number of extensions: 190682
Number of successful extensions: 446
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 445
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 752336160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -