Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_G19
         (400 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A5.06 |ptr8||transcription factor TFIIH complex ERCC-3 sub...    29   0.35 
SPAC5D6.13 ||SPAPJ735.02c|Golgi phosphoprotein 3 family|Schizosa...    27   1.1  
SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr 2|...    25   4.3  
SPAPB1E7.03 |rpc82||DNA-directed RNA polymerase III complex subu...    25   5.7  
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    24   10.0 
SPCC11E10.02c |gpi8||pig-K|Schizosaccharomyces pombe|chr 3|||Manual    24   10.0 
SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc...    24   10.0 
SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130 |S...    24   10.0 

>SPAC17A5.06 |ptr8||transcription factor TFIIH complex ERCC-3
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 804

 Score = 28.7 bits (61), Expect = 0.35
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +1

Query: 40  HLSKISCFEKNCCITNSVYNVYFTPN 117
           H++K+ C E  C +T   YN Y   N
Sbjct: 510 HIAKVQCAEVWCAMTTEFYNEYLREN 535


>SPAC5D6.13 ||SPAPJ735.02c|Golgi phosphoprotein 3
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 337

 Score = 27.1 bits (57), Expect = 1.1
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +1

Query: 286 IHCGESVGINLPELLAAEV 342
           +H   SVG NLPEL++ E+
Sbjct: 291 LHASSSVGANLPELISEEL 309


>SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 554

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +1

Query: 247 HCSVARHSIRYWHIHCGESVGINLPELLAAEVVGL 351
           H  +    I YW ++  E+  +  P+   AE VGL
Sbjct: 512 HPDILNELIEYWLVYEAETGVVTAPDDFVAENVGL 546


>SPAPB1E7.03 |rpc82||DNA-directed RNA polymerase III complex subunit
           Rpc82 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 591

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = -2

Query: 249 VLYRRWFASYCACQAPPERQLVHRGRLEVPLMDRRT 142
           +L   +F   C+  A     L+  GRL +P++ +RT
Sbjct: 11  ILVEEFFGDCCSAVASA---LLRHGRLTIPMLQKRT 43


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
            Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +1

Query: 31   IRLHLSKISCFEKNCCITNSV 93
            I L   K+ CF+ +CC  N +
Sbjct: 1841 ICLFCGKLLCFQSHCCSFNGI 1861


>SPCC11E10.02c |gpi8||pig-K|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 380

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +1

Query: 61  FEKNCCITNSVYNVYFTPNCVEI-TTTAGTPVHEGH 165
           F  + C  NS+Y   ++PN + I ++  GT  +  H
Sbjct: 182 FMVDTCQANSLYTKIYSPNVLAIGSSEVGTSSYSHH 217


>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
           Sap155|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1188

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 191 CRSGGAWQAQYDANQRRYNTALLLG 265
           CRS  +WQA++   +     ALLLG
Sbjct: 536 CRSKKSWQARHTGVRIIQQIALLLG 560


>SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1206

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 16/72 (22%), Positives = 33/72 (45%)
 Frame = -2

Query: 315 INPDAFATMNVPVANAMPSNRAVLYRRWFASYCACQAPPERQLVHRGRLEVPLMDRRTCC 136
           ++ +++  + VP  N  PS   V+   W  SY   Q     +  H    ++P++ R+   
Sbjct: 234 VDRNSYMLIPVPGGNDGPSGTLVISNGWI-SYRHLQ-----KAFH----QIPILRRQAAS 283

Query: 135 CSNLDTIWREIN 100
            + + T W ++N
Sbjct: 284 ANAISTPWNQVN 295


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,494,360
Number of Sequences: 5004
Number of extensions: 27681
Number of successful extensions: 81
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)