Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_G19
(400 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0077 + 3964729-3964734,3965194-3965289,3965744-3973579,397... 29 1.8
06_03_0229 - 18481001-18481101,18481397-18481634 29 1.8
03_02_0234 + 6625417-6626184,6626314-6626339,6626435-6626531,662... 28 2.4
12_01_0828 + 7663958-7664114,7664345-7664479,7664588-7664680,766... 28 3.1
08_02_0998 - 23411422-23411649,23411897-23412625 28 3.1
04_04_0339 - 24513699-24516827 28 3.1
02_02_0307 - 8809724-8811589,8811681-8811762,8812130-8812242,881... 27 4.1
11_01_0185 + 1455635-1455817,1455997-1456051,1456415-1456611,145... 27 5.5
02_04_0533 + 23719353-23719910,23720012-23720418,23720690-23721023 27 5.5
01_01_0540 + 3957622-3960903 27 5.5
12_02_0973 + 24959440-24959451,24959962-24962195,24962539-249626... 27 7.2
04_04_0208 - 23605701-23607149 27 7.2
04_01_0380 - 5024280-5024436,5025061-5025155,5053260-5053402,505... 27 7.2
12_02_0386 + 18429675-18430679,18431001-18431111,18431139-184311... 26 9.5
10_08_0965 + 21915842-21916906 26 9.5
05_03_0446 + 14111667-14111906,14112011-14112418 26 9.5
05_03_0114 + 8539808-8539828,8540327-8541748 26 9.5
01_07_0176 - 41733845-41734834,41736058-41736588 26 9.5
01_06_0723 + 31501900-31502808,31502846-31503295 26 9.5
>09_02_0077 + 3964729-3964734,3965194-3965289,3965744-3973579,
3973665-3973982,3974565-3974763,3974937-3975202,
3975288-3975574,3976714-3977818,3977900-3978046,
3978146-3978226,3978315-3978540,3978622-3978761,
3979539-3979645,3979739-3979841
Length = 3638
Score = 28.7 bits (61), Expect = 1.8
Identities = 20/84 (23%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
Frame = +1
Query: 34 RLHLSKISCFEKNCCITNSVYNVYFTPNCVEITTTA----GTPVHEGHFKPPTMDELPFR 201
R++L ++ C + ++N+ V + P+ ++ +T+ P+ E H +P TM+++P +
Sbjct: 2902 RVYLEQVMCLLE-VVVSNAASKVDYPPHSGQMVSTSVDENRAPI-ETHGEPSTMEQVPIQ 2959
Query: 202 RRLASAVRREPASVQHCSVARHSI 273
+ PAS S+ H I
Sbjct: 2960 ENSQNKDVVVPASGPQQSINVHDI 2983
>06_03_0229 - 18481001-18481101,18481397-18481634
Length = 112
Score = 28.7 bits (61), Expect = 1.8
Identities = 25/80 (31%), Positives = 32/80 (40%), Gaps = 5/80 (6%)
Frame = +1
Query: 37 LHLSKISCFEKNCCITNSVYNVY----FTPNCVEITTTAGTPVH-EGHFKPPTMDELPFR 201
L KI K+CC + SV NVY F E T H +G +PP D L
Sbjct: 18 LQQEKIHVEAKSCCPSTSVRNVYNSCRFAGGSREACAKLSTCKHFDGSCQPP-YDHLTLH 76
Query: 202 RRLASAVRREPASVQHCSVA 261
+A A+V+ C A
Sbjct: 77 SDTVAANEGVNAAVERCEDA 96
>03_02_0234 + 6625417-6626184,6626314-6626339,6626435-6626531,
6627009-6627116,6627194-6627328,6627429-6627528,
6627763-6627974,6628060-6628125,6628231-6628464,
6628583-6628641,6628716-6628782,6628863-6629192,
6629267-6629335,6629417-6629503,6629605-6629692,
6630057-6630178,6630251-6630355,6630442-6630485,
6630558-6630627,6630711-6630814,6630980-6631189,
6632935-6633018,6633291-6634003,6634115-6634649,
6634703-6634789,6634826-6634970,6635049-6635125,
6635215-6635359,6635462-6635626,6635725-6635958
Length = 1761
Score = 28.3 bits (60), Expect = 2.4
Identities = 12/24 (50%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Frame = +2
Query: 167 SSRPRW-TSCRSGGAWQAQYDANQ 235
+S PRW S GG W AQY Q
Sbjct: 1306 NSMPRWQNSVDQGGGWHAQYSPGQ 1329
>12_01_0828 +
7663958-7664114,7664345-7664479,7664588-7664680,
7667122-7668368
Length = 543
Score = 27.9 bits (59), Expect = 3.1
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +3
Query: 159 GALQAAHDGRAAVPAAPGKRSTTRTSVGT 245
G Q A G AAV AAPG + RT+ T
Sbjct: 90 GGDQEAQPGTAAVDAAPGHDKSLRTAAAT 118
>08_02_0998 - 23411422-23411649,23411897-23412625
Length = 318
Score = 27.9 bits (59), Expect = 3.1
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +1
Query: 175 PTMDELPFRRRLASAVRREPASVQHCSVARH 267
P + LP+ R A RREP V +VA H
Sbjct: 48 PLLRRLPYLRLAAPPARREPVVVGAAAVAEH 78
>04_04_0339 - 24513699-24516827
Length = 1042
Score = 27.9 bits (59), Expect = 3.1
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +1
Query: 190 LPFRRRLASAVRREPASVQHCSVARHSIRY 279
LPFRRR+ +++ +Q C + IR+
Sbjct: 99 LPFRRRIVHKIKQSIVELQECYAQTYRIRF 128
>02_02_0307 -
8809724-8811589,8811681-8811762,8812130-8812242,
8812361-8812492,8812681-8812864,8813002-8813135,
8813552-8813656,8813738-8813839,8813930-8814022,
8814136-8814456,8814595-8814696,8814791-8814853,
8815213-8815708,8815964-8816124,8816213-8816743,
8817077-8817118,8817203-8817334,8817639-8817703,
8817858-8818169,8818262-8818334,8818425-8818517,
8819440-8819501,8819740-8819809
Length = 1777
Score = 27.5 bits (58), Expect = 4.1
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Frame = +2
Query: 173 RPRWTSC----RSGGAWQAQYDANQRRYNTALLLGIAFATGTFIVAK 301
R RW R G W+ +Y A+ R+Y A+L GI G +V K
Sbjct: 805 RQRWLEVFLVKRFGWTWKDEYRADLRKY--AILRGICHKVGLELVTK 849
>11_01_0185 +
1455635-1455817,1455997-1456051,1456415-1456611,
1456850-1457206,1457355-1457424,1457527-1457672,
1457786-1457831,1457910-1457962,1458507-1458651,
1459268-1459386,1459494-1459565,1459872-1459975,
1460117-1460173,1460260-1460452,1460535-1460678,
1460825-1460927,1461444-1461592,1462674-1462728,
1464037-1464227,1464580-1464701,1464831-1464978,
1465354-1465423,1465499-1465644,1466097-1466247,
1466614-1466732,1466807-1466848,1466849-1466961,
1467496-1467552,1467642-1467834,1468040-1468183,
1468567-1468665
Length = 1280
Score = 27.1 bits (57), Expect = 5.5
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
Frame = +1
Query: 232 PASVQHCSVARHSIRYWHIHCG----ESVGINLPELLAAEVVG 348
P S Q C A I H+HCG E + + + +++ E +G
Sbjct: 670 PNSWQRCEAATQGILTSHLHCGKLSREQIQLVVDKIMMGEKIG 712
>02_04_0533 + 23719353-23719910,23720012-23720418,23720690-23721023
Length = 432
Score = 27.1 bits (57), Expect = 5.5
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = +1
Query: 223 RREPASVQHCSVARHSIRYWHIHCGESVGINLPELLA 333
RR SV CS+ RH W E G + +L++
Sbjct: 391 RRASISVARCSLNRHDALVWSTELQELTGYSFEDLVS 427
>01_01_0540 + 3957622-3960903
Length = 1093
Score = 27.1 bits (57), Expect = 5.5
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = +1
Query: 208 LASAVRREPASVQHCSVARHSIRYWHIHCGESVGINLPELLAAEVVGLIV 357
LA VR E AS H++R W + E +G+ L +V+G +V
Sbjct: 910 LARPVRSE-ASYMDARGEAHALREWAVTLEEYIGLAQDMFLLPQVIGNVV 958
>12_02_0973 + 24959440-24959451,24959962-24962195,24962539-24962653,
24963146-24963943,24964140-24964422,24964500-24964951,
24965744-24965870,24965950-24966074,24966188-24966858,
24966976-24967093,24967177-24967293,24967564-24967658,
24968152-24968303,24968858-24968913,24969001-24969218,
24969842-24970239,24970345-24970628,24970730-24970836,
24970882-24970968,24971729-24971990,24972228-24972503,
24973197-24973254,24973437-24973756,24973889-24973999,
24974183-24974350,24974494-24974622,24974731-24974820,
24974934-24975040,24975133-24975281,24975584-24975666,
24975749-24975844,24975957-24976079,24976180-24976263,
24976371-24976511,24976652-24976951,24977386-24977453,
24977540-24977642,24979363-24979524,24979613-24981230,
24981270-24981661,24981689-24981991,24982078-24982161,
24982296-24982448,24982678-24982841,24982915-24983062,
24983209-24983331,24983409-24983496,24983686-24983867
Length = 4177
Score = 26.6 bits (56), Expect = 7.2
Identities = 14/50 (28%), Positives = 21/50 (42%)
Frame = +2
Query: 104 ISRQIVSRLLQQQVRRSMRGTSSRPRWTSCRSGGAWQAQYDANQRRYNTA 253
I I R+L+ Q+ M+ RP + C S W + QR + A
Sbjct: 2974 IPNPIARRILENQI---MKHNDERPNYEICESSVRWHNKKQTGQRLHMAA 3020
>04_04_0208 - 23605701-23607149
Length = 482
Score = 26.6 bits (56), Expect = 7.2
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = -2
Query: 390 TVCWFYAXEVLYN*SNDFGGEK 325
T+CWF+ +++ N SN+ GG +
Sbjct: 444 TICWFFLSDIV-NASNNSGGRR 464
>04_01_0380 -
5024280-5024436,5025061-5025155,5053260-5053402,
5053463-5053673
Length = 201
Score = 26.6 bits (56), Expect = 7.2
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +1
Query: 112 PNCVEITTTAGTPVHEGHFKPPTMDEL 192
P+ +I +G VHEG+ P T+D+L
Sbjct: 18 PSKTDIPKPSGFEVHEGNIVPVTIDKL 44
>12_02_0386 +
18429675-18430679,18431001-18431111,18431139-18431195,
18431552-18431589,18431688-18431733,18431811-18431849
Length = 431
Score = 26.2 bits (55), Expect = 9.5
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +1
Query: 55 SCFEKNCCITNSVYNVYFTPNCV 123
SC E NC + NS+ ++Y C+
Sbjct: 132 SCVEMNCHVQNSLIDMYAKCGCI 154
>10_08_0965 + 21915842-21916906
Length = 354
Score = 26.2 bits (55), Expect = 9.5
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Frame = +2
Query: 149 RSMRGTSSR--PRWTSCRSGGAWQAQYDA 229
RS S+R RW+S S G W ++YDA
Sbjct: 280 RSQERWSNRWSSRWSSRWSSGRWSSRYDA 308
>05_03_0446 + 14111667-14111906,14112011-14112418
Length = 215
Score = 26.2 bits (55), Expect = 9.5
Identities = 14/22 (63%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Frame = +3
Query: 177 HDGRAAVPAAPG-KRSTTRTSV 239
+DG AA PAAPG KR T R V
Sbjct: 91 YDGDAASPAAPGPKRFTARRHV 112
>05_03_0114 + 8539808-8539828,8540327-8541748
Length = 480
Score = 26.2 bits (55), Expect = 9.5
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = +2
Query: 203 GAWQAQYDANQRR-YNTALLLGIAFATGTFIVAKASGLIYLNFSPP 337
G W + A RR Y + I+ A TF++A A+ Y PP
Sbjct: 433 GTWWHSHMAGLRRNYFPSPWSAISVAVATFVIALAATQTYFTVFPP 478
>01_07_0176 - 41733845-41734834,41736058-41736588
Length = 506
Score = 26.2 bits (55), Expect = 9.5
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = +1
Query: 280 WHIHCGESVGINLPELLAAEVVGL 351
WH HC +V + L L AA G+
Sbjct: 146 WHTHCAAAVDLALDTLAAARSFGV 169
>01_06_0723 + 31501900-31502808,31502846-31503295
Length = 452
Score = 26.2 bits (55), Expect = 9.5
Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Frame = +2
Query: 158 RGTSSRPRWTS--CRSGGAWQAQYDAN 232
R + R W S CRS GA A+YDAN
Sbjct: 16 RPSPYRGGWLSRRCRSSGADTAEYDAN 42
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,141,638
Number of Sequences: 37544
Number of extensions: 198124
Number of successful extensions: 723
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 712
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 723
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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