Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_G19
         (400 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49265| Best HMM Match : efhand (HMM E-Value=0.68)                   36   0.009
SB_50274| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.8  
SB_36891| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.4  
SB_18867| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.4  
SB_18678| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.8  

>SB_49265| Best HMM Match : efhand (HMM E-Value=0.68)
          Length = 720

 Score = 36.3 bits (80), Expect = 0.009
 Identities = 18/70 (25%), Positives = 31/70 (44%)
 Frame = +1

Query: 43  LSKISCFEKNCCITNSVYNVYFTPNCVEITTTAGTPVHEGHFKPPTMDELPFRRRLASAV 222
           L  +   + +C +   VY  Y  P  + +         + + KPP     P  +RL S +
Sbjct: 207 LETVELCQFSCHLLILVYE-YTEPQTIPLGFLEEVMPEKTNRKPPEKQPAPIHQRLTSVI 265

Query: 223 RREPASVQHC 252
           R+ P S++HC
Sbjct: 266 RKNPLSLEHC 275


>SB_50274| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 369

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 22/95 (23%), Positives = 39/95 (41%), Gaps = 3/95 (3%)
 Frame = +2

Query: 47  VKLVVLRRIAASQIPYTMFISRQIVSRLLQQQV--RRSMRGTSSRPRWTSCRSGGAWQAQ 220
           VK+  + R+   ++       +  +SR  + +V  RR  RGTS+     +CR    W++ 
Sbjct: 50  VKVQAISRVQNPELWENFIRKKSQMSRKTKGEVEQRRLFRGTSAIDIRNTCRENFDWRSD 109

Query: 221 YDANQRRYNTALLLGIAFATG-TFIVAKASGLIYL 322
            +     Y        +  TG  +  A   GL Y+
Sbjct: 110 VNETGNMYGEGAYFAKSALTGDQYSTADEDGLQYM 144


>SB_36891| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2124

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 17/61 (27%), Positives = 29/61 (47%)
 Frame = +1

Query: 103 YFTPNCVEITTTAGTPVHEGHFKPPTMDELPFRRRLASAVRREPASVQHCSVARHSIRYW 282
           YFTP+ +E+ T       +G F  P+M    +     S++ R   S  +C +  H I+ +
Sbjct: 701 YFTPDEIEVFTYRSKITSKGSFIHPSMPTATYVNIETSSIARLEFSSINC-LHGHQIKTF 759

Query: 283 H 285
           H
Sbjct: 760 H 760


>SB_18867| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 380

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 14/39 (35%), Positives = 17/39 (43%)
 Frame = +1

Query: 109 TPNCVEITTTAGTPVHEGHFKPPTMDELPFRRRLASAVR 225
           TP+     T A       HFK PT   L + R   SA+R
Sbjct: 36  TPSAATPCTKAQIEASVSHFKHPTCTVLEYARDFGSAMR 74


>SB_18678| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 727

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = +2

Query: 212 QAQYDANQRRYNTALLLGIAFATGTFIVAKASGLIYLN 325
           Q Q +   +  N + +  IA+A+  F++ + SG+I +N
Sbjct: 335 QVQAEDIDQGVNASFIYEIAYASHEFVIGEHSGIIIVN 372


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,404,986
Number of Sequences: 59808
Number of extensions: 222152
Number of successful extensions: 589
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 589
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 703143849
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)