Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_G19
         (400 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z54271-5|CAA91035.2|  407|Caenorhabditis elegans Hypothetical pr...    32   0.13 
AF292046-1|AAG41142.1|  407|Caenorhabditis elegans polynucleotid...    32   0.13 
Z70311-6|CAA94379.3|  442|Caenorhabditis elegans Hypothetical pr...    31   0.23 
U80815-2|AAB37995.1| 1372|Caenorhabditis elegans Hypothetical pr...    29   1.2  
AL117205-4|CAB55162.1|  441|Caenorhabditis elegans Hypothetical ...    28   2.8  
AF043699-2|AAB97567.1|  311|Caenorhabditis elegans Ubiquitin-lik...    28   2.8  
Z93395-4|CAB07707.1| 2295|Caenorhabditis elegans Hypothetical pr...    27   6.5  
Z93375-7|CAB07568.1| 2295|Caenorhabditis elegans Hypothetical pr...    27   6.5  
Z73422-3|CAA97766.1|  523|Caenorhabditis elegans Hypothetical pr...    26   8.7  

>Z54271-5|CAA91035.2|  407|Caenorhabditis elegans Hypothetical
           protein F21D5.5 protein.
          Length = 407

 Score = 32.3 bits (70), Expect = 0.13
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
 Frame = +1

Query: 52  ISCFEKNCCITNSVYNVYF----TPNCVEITTTAGTPVHEGHFKPPTMDE 189
           I CFE NC + ++ +N+ F      N  EI++     +H+G +  PT+ E
Sbjct: 330 IRCFEMNCSMEHAQHNIRFRVLTDDNAAEISSMV-LRIHKGKYVEPTLSE 378


>AF292046-1|AAG41142.1|  407|Caenorhabditis elegans polynucleotide
           kinase 3' phosphataseprotein.
          Length = 407

 Score = 32.3 bits (70), Expect = 0.13
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
 Frame = +1

Query: 52  ISCFEKNCCITNSVYNVYF----TPNCVEITTTAGTPVHEGHFKPPTMDE 189
           I CFE NC + ++ +N+ F      N  EI++     +H+G +  PT+ E
Sbjct: 330 IRCFEMNCSMEHAQHNIRFRVLTDDNAAEISSMV-LRIHKGKYVEPTLSE 378


>Z70311-6|CAA94379.3|  442|Caenorhabditis elegans Hypothetical
           protein T25B9.8 protein.
          Length = 442

 Score = 31.5 bits (68), Expect = 0.23
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = -2

Query: 168 EVPLMDRRTCCCSNLDTIWREINIVYGICDAAILLKTTNFTQVQSYN 28
           E+  M R  CC S+LD ++       G+ D  I + T N   VQ+Y+
Sbjct: 330 ELARMQRFKCCVSHLDELYESALHFLGVVDPDIDIHTDNEKIVQAYH 376


>U80815-2|AAB37995.1| 1372|Caenorhabditis elegans Hypothetical protein
            W02C12.1 protein.
          Length = 1372

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +1

Query: 58   CFEKNCCITNSVYNVYFTPNCVEITTTAGTPVHEGHFKP 174
            CF  N C T   YN  +  NC+++      P +E   KP
Sbjct: 1148 CFSTNQCATGE-YNCSWHANCIDLPDENDVPSYECRCKP 1185


>AL117205-4|CAB55162.1|  441|Caenorhabditis elegans Hypothetical
           protein Y116A8A.4 protein.
          Length = 441

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = +3

Query: 69  ELLHHKFRIQCLFHAKLCRDYYNSRYAGP*GALQAAHDGRAAVPA--APGKR 218
           +LLHHK  I+ +    +C + Y +   G  G L     G+A V    APG R
Sbjct: 210 DLLHHKLLIKAVKDGGICTETYYTEEVG--GPLVQNVSGKATVIGLKAPGSR 259


>AF043699-2|AAB97567.1|  311|Caenorhabditis elegans Ubiquitin-like
           protease protein 5 protein.
          Length = 311

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -2

Query: 213 CQAPPERQLVHRGRLEVPLMDRR 145
           C+APPE++L H   LE+   DRR
Sbjct: 10  CEAPPEKRLAH---LEIRFKDRR 29


>Z93395-4|CAB07707.1| 2295|Caenorhabditis elegans Hypothetical protein
            ZC101.2c protein.
          Length = 2295

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +1

Query: 109  TPNCVEITTTAGTPVHEGHFKPPT 180
            TP  V +T  A  P  E H +PPT
Sbjct: 1677 TPATVHVTNAAAPPQVEAHQEPPT 1700


>Z93375-7|CAB07568.1| 2295|Caenorhabditis elegans Hypothetical protein
            ZC101.2c protein.
          Length = 2295

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +1

Query: 109  TPNCVEITTTAGTPVHEGHFKPPT 180
            TP  V +T  A  P  E H +PPT
Sbjct: 1677 TPATVHVTNAAAPPQVEAHQEPPT 1700


>Z73422-3|CAA97766.1|  523|Caenorhabditis elegans Hypothetical
           protein B0564.4 protein.
          Length = 523

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -2

Query: 261 SNRAVLYRRWFASYCA-CQAPPERQLVHRGRLEVPLMD 151
           S +A++YRR  A YCA  Q    R +  R R   P M+
Sbjct: 118 SEKAIIYRRNIARYCALTQLLVFRDVSMRTRRRFPTME 155


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,487,864
Number of Sequences: 27780
Number of extensions: 163155
Number of successful extensions: 507
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 507
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 619699724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)