Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_G19
         (400 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    23   1.7  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    21   6.9  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    20   9.1  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    20   9.1  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        20   9.1  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        20   9.1  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        20   9.1  

>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 22.6 bits (46), Expect = 1.7
 Identities = 16/48 (33%), Positives = 20/48 (41%), Gaps = 3/48 (6%)
 Frame = +1

Query: 49  KISCFEKNCCITNSVYN---VYFTPNCVEITTTAGTPVHEGHFKPPTM 183
           KI     N  I N+ YN    Y   N  +I      P+H G+F P  M
Sbjct: 313 KIISSLSNNTIHNNNYNKKLYYNIINIEQIPVPVPVPIHCGNFPPRPM 360


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +2

Query: 257 LLGIAFATGTFIVAKASGLIYLNFSPPKSL 346
           LL + +   TF+    +GL+   F   KSL
Sbjct: 50  LLALLYILFTFLALLGNGLVIWIFCAAKSL 79


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 20.2 bits (40), Expect = 9.1
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = +1

Query: 271 IRYWHIHCGESVG 309
           +RY   HC E +G
Sbjct: 589 VRYGKPHCAEEIG 601


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 20.2 bits (40), Expect = 9.1
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = +1

Query: 271 IRYWHIHCGESVG 309
           +RY   HC E +G
Sbjct: 627 VRYGKPHCAEEIG 639


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.2 bits (40), Expect = 9.1
 Identities = 10/30 (33%), Positives = 12/30 (40%)
 Frame = +3

Query: 120 CRDYYNSRYAGP*GALQAAHDGRAAVPAAP 209
           C+      Y G  GAL    DG+  V   P
Sbjct: 565 CKATNEETYRGGKGALSCLLDGKGDVAFVP 594


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.2 bits (40), Expect = 9.1
 Identities = 10/30 (33%), Positives = 12/30 (40%)
 Frame = +3

Query: 120 CRDYYNSRYAGP*GALQAAHDGRAAVPAAP 209
           C+      Y G  GAL    DG+  V   P
Sbjct: 565 CKATNEETYRGGKGALSCLLDGKGDVAFVP 594


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.2 bits (40), Expect = 9.1
 Identities = 10/30 (33%), Positives = 12/30 (40%)
 Frame = +3

Query: 120 CRDYYNSRYAGP*GALQAAHDGRAAVPAAP 209
           C+      Y G  GAL    DG+  V   P
Sbjct: 565 CKATNEETYRGGKGALSCLLDGKGDVAFVP 594


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,923
Number of Sequences: 438
Number of extensions: 2475
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9885360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)