Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_G18
(461 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC2E1P5.01c |mns1|SPAPB1E7.13c|mannosyl-oligosaccharide 1,2-al... 30 0.20
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc... 29 0.26
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces... 29 0.46
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar... 28 0.80
SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb... 27 1.1
SPBC25B2.08 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 1.1
SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces ... 27 1.4
SPAC1687.20c |mis6||inner centromere protein Mis6|Schizosaccharo... 26 3.2
SPAC24B11.05 |||pyrimidine 5'-nucleotidase |Schizosaccharomyces ... 25 4.3
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 25 5.6
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi... 25 7.4
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra... 25 7.4
>SPAC2E1P5.01c |mns1|SPAPB1E7.13c|mannosyl-oligosaccharide
1,2-alpha-mannosidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 521
Score = 29.9 bits (64), Expect = 0.20
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = -3
Query: 114 SNVNLGNLTSTRRSRKLFISTRRS 43
SNVNLG S +R+R+ F+ST S
Sbjct: 175 SNVNLGTRKSRKRTREYFVSTAES 198
>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1238
Score = 29.5 bits (63), Expect = 0.26
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = -3
Query: 234 DNLSASRTSCPRANPGNEAVPSKACLTPNSLSTPFKRDVYSNVNL 100
+N+S S + GNEAV SK P L PF+ V N+
Sbjct: 948 ENISTSVADVSLSQAGNEAVLSKKACKPLVLIDPFEEKVLKAFNM 992
>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 565
Score = 28.7 bits (61), Expect = 0.46
Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 1/96 (1%)
Frame = -3
Query: 324 PNLFTIPTCVAA*AMLPTSLTSMPHVCRTCD-NLSASRTSCPRANPGNEAVPSKACLTPN 148
P+ +P+ + + ++ P+ + +P + CD N ++ T A + S + L+
Sbjct: 433 PSCVQLPS-IRSLSLRPSQVPLIPPL--KCDPNAFSASTPASGAVSRTPSSVSLSSLSNV 489
Query: 147 SLSTPFKRDVYSNVNLGNLTSTRRSRKLFISTRRSL 40
+ S P K SNV ++S RRSRK S+R S+
Sbjct: 490 NSSMPHKPASQSNVGPVRISSNRRSRKFSSSSRVSV 525
>SPAC6C3.06c |||P-type ATPase, calcium
transporting|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1033
Score = 27.9 bits (59), Expect = 0.80
Identities = 20/54 (37%), Positives = 28/54 (51%)
Frame = +2
Query: 266 NEVGSIAYAATQVGIVNKFGEDSDVLYEVVADRPFMFFIQDEVTRQLLFTGRVS 427
N+VG I A +GIV K G+ + + AD F V+R LL+ GR+S
Sbjct: 773 NDVGMIQVANVGIGIVGKEGQQA----SLAADYSVKEF--SHVSRLLLWHGRIS 820
>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 929
Score = 27.5 bits (58), Expect = 1.1
Identities = 16/44 (36%), Positives = 20/44 (45%)
Frame = -2
Query: 433 GFGDTPGEQQLPGDFVLDEEHERSIGHHLVEDVGIFSKLIYDTN 302
G + EQ GD ++ H + I EDV FS YDTN
Sbjct: 519 GTREAVNEQIRKGDELMQRIHGKEISEMDGEDVSEFSDSDYDTN 562
>SPBC25B2.08 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 125
Score = 27.5 bits (58), Expect = 1.1
Identities = 16/58 (27%), Positives = 26/58 (44%)
Frame = -3
Query: 174 PSKACLTPNSLSTPFKRDVYSNVNLGNLTSTRRSRKLFISTRRSLKLFRTRGKPVREL 1
PSK C++ L+TP S + TS +RSR + + R R + +R +
Sbjct: 37 PSKLCISSEKLNTPMHNRSRSGIK--KHTSVKRSRSFKLFDTLFFGILRLRKQRIRSV 92
>SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 965
Score = 27.1 bits (57), Expect = 1.4
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = -3
Query: 156 TPNSLSTPFKRDVYSNVNLGNLTSTRRSRKLFISTRRSLKLFRTR 22
T + TP D S N+G+ +TR S+ L RRS FR R
Sbjct: 77 TDENPDTPSNLDSPSTQNVGSTNNTRASQSLL---RRSSSFFRRR 118
>SPAC1687.20c |mis6||inner centromere protein
Mis6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 672
Score = 25.8 bits (54), Expect = 3.2
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Frame = +2
Query: 29 LNSLSDLRVEMNNLRERLVDVR---LPKFTFEYTSRLNGVL 142
+NS+ L + N +ERL+D R + KFT Y L+ ++
Sbjct: 508 INSMVGLLLLTKNYQERLMDSRIDAISKFTHSYLKSLSEII 548
>SPAC24B11.05 |||pyrimidine 5'-nucleotidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 226
Score = 25.4 bits (53), Expect = 4.3
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Frame = +2
Query: 68 LRERLVDVRLPK----FTFEYTSRLNGVLRELGVRQAFEG 175
LRE L+++R FT Y N VL+ LG+ F+G
Sbjct: 95 LREMLLELRKKYKCWIFTNAYIVHANRVLKYLGIEDCFDG 134
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 25.0 bits (52), Expect = 5.6
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -3
Query: 192 PGNEAVPSKACLTPN 148
PGNEA+PS + + PN
Sbjct: 280 PGNEALPSHSSVPPN 294
>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
Air1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 313
Score = 24.6 bits (51), Expect = 7.4
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = -3
Query: 255 PHVCRTCDNLSASRTSCP 202
P VCRTC + + ++CP
Sbjct: 148 PRVCRTCHTDTHTSSTCP 165
>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
transporting Cta4 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1211
Score = 24.6 bits (51), Expect = 7.4
Identities = 12/53 (22%), Positives = 25/53 (47%)
Frame = +2
Query: 236 HVLQTCGIEVNEVGSIAYAATQVGIVNKFGEDSDVLYEVVADRPFMFFIQDEV 394
++ CG N+VG++ A V ++N ED + E ++ M + ++
Sbjct: 817 YITLMCGDGTNDVGALKQAHVGVALLNASEEDMLEMQERARNQKLMGVYEKQI 869
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,778,445
Number of Sequences: 5004
Number of extensions: 33569
Number of successful extensions: 110
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 174340060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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