Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_G18
(461 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g45220.1 68416.m04880 serpin, putative / serine protease inhi... 65 2e-11
At1g47710.1 68414.m05302 serpin, putative / serine protease inhi... 63 1e-10
At2g25240.1 68415.m03020 serpin, putative / serine protease inhi... 60 7e-10
At2g26390.1 68415.m03167 serpin, putative / serine protease inhi... 51 4e-07
At1g64010.1 68414.m07250 serpin, putative / serine protease inhi... 44 7e-05
At2g14540.1 68415.m01628 serpin family protein / serine protease... 43 9e-05
At1g64030.1 68414.m07252 serpin family protein / serine protease... 41 4e-04
At2g35580.1 68415.m04357 serpin family protein / serine protease... 39 0.002
At1g62170.1 68414.m07013 serpin family protein / serine protease... 35 0.023
At5g49665.1 68418.m06148 zinc finger (C3HC4-type RING finger) fa... 29 2.0
At2g33580.1 68415.m04115 protein kinase family protein / peptido... 29 2.0
At1g05120.1 68414.m00514 SNF2 domain-containing protein / helica... 29 2.0
At5g04040.1 68418.m00384 patatin-related contains Patatin domain... 28 2.7
At4g21390.1 68417.m03090 S-locus lectin protein kinase family pr... 28 2.7
At1g75640.1 68414.m08788 leucine-rich repeat family protein / pr... 28 3.5
At5g25480.1 68418.m03032 C-5 cytosine-specific DNA methylase fam... 27 4.7
At3g18070.1 68416.m02298 glycosyl hydrolase family 1 protein con... 27 4.7
At5g48310.1 68418.m05968 expressed protein 27 6.2
At5g38620.1 68418.m04671 MADS-box protein (AGL73) contains Pfam ... 27 6.2
At4g12790.2 68417.m02007 ATP-binding family protein contains Pfa... 27 6.2
At4g12790.1 68417.m02006 ATP-binding family protein contains Pfa... 27 6.2
At2g40070.1 68415.m04923 expressed protein 27 6.2
At2g15320.1 68415.m01747 leucine-rich repeat family protein cont... 27 6.2
At5g10290.1 68418.m01194 leucine-rich repeat family protein / pr... 27 8.2
At3g48150.1 68416.m05251 cell division cycle family protein / CD... 27 8.2
At1g77500.1 68414.m09025 expressed protein contains Pfam domains... 27 8.2
>At3g45220.1 68416.m04880 serpin, putative / serine protease
inhibitor, putative similar to phloem serpin-1
[Cucurbita maxima] GI:9937311; contains Pfam profile
PF00079: Serpin (serine protease inhibitor)
Length = 393
Score = 65.3 bits (152), Expect = 2e-11
Identities = 49/155 (31%), Positives = 84/155 (54%), Gaps = 9/155 (5%)
Frame = +2
Query: 2 NSLTGLPRVLNSLSDLRVEMNNL--RERLVD--VRLPKFTFEYTSRLNGVLRELGVRQAF 169
N GLP +L +S ++N R+R++ ++PKF F + + + VL+E+G+ F
Sbjct: 242 NDRDGLPTLLEEISSKPRFLDNHIPRQRILTEAFKIPKFKFSFEFKASDVLKEMGLTLPF 301
Query: 170 -EGTAS----FPGLARGQLVREALRLSHVLQTCGIEVNEVGSIAYAATQVGIVNKFGEDS 334
G+ + P + V E L +S+V IEV+E G+ A AA V + K D
Sbjct: 302 THGSLTEMVESPSIPENLCVAENLFVSNVFHKACIEVDEEGTEA-AAVSVASMTK---DM 357
Query: 335 DVLYEVVADRPFMFFIQDEVTRQLLFTGRVSEPAI 439
++ + VAD PF+F +++E + +LF G+V +P+I
Sbjct: 358 LLMGDFVADHPFLFTVREEKSGVILFMGQVLDPSI 392
>At1g47710.1 68414.m05302 serpin, putative / serine protease
inhibitor, putative similar to phloem serpin-1
[Cucurbita maxima] GI:9937311; contains Pfam profile
PF00079: Serpin (serine protease inhibitor)
Length = 391
Score = 62.9 bits (146), Expect = 1e-10
Identities = 47/153 (30%), Positives = 76/153 (49%), Gaps = 14/153 (9%)
Frame = +2
Query: 17 LPRVLNSLSDLRVEM--------NNLRERLVDVR---LPKFTFEYTSRLNGVLRELGVRQ 163
LP N LSDL ++ N++ R V VR +PKF F + + VL+ LG+
Sbjct: 240 LPDANNGLSDLLDKIVSTPGFLDNHIPRRQVKVREFKIPKFKFSFGFDASNVLKGLGLTS 299
Query: 164 AFEGTASFPGLARGQLVREALRLSHVLQTCGIEVNEVGSIAYAATQVGIVNKFG---EDS 334
F G + + + L +S++ IEVNE G+ A AA G++ G E+
Sbjct: 300 PFSGEEGLTEMVESPEMGKNLCVSNIFHKACIEVNEEGTEA-AAASAGVIKLRGLLMEED 358
Query: 335 DVLYEVVADRPFMFFIQDEVTRQLLFTGRVSEP 433
++ + VAD PF+ + + +T +LF G+V +P
Sbjct: 359 EI--DFVADHPFLLVVTENITGVVLFIGQVVDP 389
>At2g25240.1 68415.m03020 serpin, putative / serine protease
inhibitor, putative similar to phloem serpin-1
[Cucurbita maxima] GI:9937311; contains Pfam profile
PF00079: Serpin (serine protease inhibitor)
Length = 324
Score = 60.1 bits (139), Expect = 7e-10
Identities = 37/117 (31%), Positives = 63/117 (53%), Gaps = 2/117 (1%)
Frame = +2
Query: 92 RLPKFTFEYTSRLNGVLRELGVRQAFEGTASFPGLARGQLVREALRLSHVLQTCGIEVNE 271
R+PKF F + + VL+++G+ F + + L +S +L IEV+E
Sbjct: 211 RIPKFKFSFEFNASEVLKDMGLTSPFNNGGGLTEMVDSPSNGDDLYVSSILHKACIEVDE 270
Query: 272 VGSIAYAATQVGIVN--KFGEDSDVLYEVVADRPFMFFIQDEVTRQLLFTGRVSEPA 436
G+ A AA VG+V+ F + D VADRPF+F ++++ + +LF G+V +P+
Sbjct: 271 EGTEA-AAVSVGVVSCTSFRRNPDF----VADRPFLFTVREDKSGVILFMGQVLDPS 322
>At2g26390.1 68415.m03167 serpin, putative / serine protease
inhibitor, putative similar to phloem serpin-1
[Cucurbita maxima] GI:9937311; contains Pfam profile
PF00079: Serpin (serine protease inhibitor)
Length = 389
Score = 50.8 bits (116), Expect = 4e-07
Identities = 31/116 (26%), Positives = 61/116 (52%)
Frame = +2
Query: 89 VRLPKFTFEYTSRLNGVLRELGVRQAFEGTASFPGLARGQLVREALRLSHVLQTCGIEVN 268
+R+PK F + + + VL+++G+ F + + + L +S ++ IEV+
Sbjct: 275 LRIPKLNFSFEFKASEVLKDMGLTSPFTSKGNLTEMVDSPSNGDKLHVSSIIHKACIEVD 334
Query: 269 EVGSIAYAATQVGIVNKFGEDSDVLYEVVADRPFMFFIQDEVTRQLLFTGRVSEPA 436
E G+ A AA V I+ + + VAD PF+F ++++ + +LF G+V +P+
Sbjct: 335 EEGTEA-AAVSVAIMMPQCLMRNP--DFVADHPFLFTVREDNSGVILFIGQVLDPS 387
>At1g64010.1 68414.m07250 serpin, putative / serine protease
inhibitor, putative similar to phloem serpin-1
[Cucurbita maxima] GI:9937311; contains Pfam profile
PF00079: Serpin (serine protease inhibitor)
Length = 185
Score = 43.6 bits (98), Expect = 7e-05
Identities = 24/64 (37%), Positives = 38/64 (59%)
Frame = +2
Query: 245 QTCGIEVNEVGSIAYAATQVGIVNKFGEDSDVLYEVVADRPFMFFIQDEVTRQLLFTGRV 424
Q +E++E G+ A AAT V V FG + VAD PF+F I+++ T +LF G++
Sbjct: 121 QKACVEIDEEGAEAIAATAV--VGGFGCAFVKRIDFVADHPFLFMIREDKTGTVLFVGQI 178
Query: 425 SEPA 436
+P+
Sbjct: 179 FDPS 182
>At2g14540.1 68415.m01628 serpin family protein / serine protease
inhibitor family protein similar to phloem serpin-1
[Cucurbita maxima] GI:9937311; contains Pfam profile
PF00079: Serpin (serine protease inhibitor)
Length = 407
Score = 43.2 bits (97), Expect = 9e-05
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 2/67 (2%)
Frame = +2
Query: 257 IEVNEVGSIAYAATQVGIVNK--FGEDSDVLYEVVADRPFMFFIQDEVTRQLLFTGRVSE 430
IE++E G+ A AAT V +V E + + VAD PF+F I+++ T LLF G++ +
Sbjct: 338 IEIDEEGTEAAAATTVVVVTGSCLWEPKKKI-DFVADHPFLFLIREDKTGTLLFAGQIFD 396
Query: 431 PAIVGAA 451
P+ + +A
Sbjct: 397 PSELSSA 403
>At1g64030.1 68414.m07252 serpin family protein / serine protease
inhibitor family protein similar to phloem serpin-1
[Cucurbita maxima] GI:9937311, serpin [Triticum
aestivum] GI:871551; contains Pfam profile PF00079:
Serpin (serine protease inhibitor)
Length = 385
Score = 41.1 bits (92), Expect = 4e-04
Identities = 37/125 (29%), Positives = 60/125 (48%), Gaps = 3/125 (2%)
Frame = +2
Query: 71 RERLVDVRLPKFTFEYTSRLNGVLRELGVRQAFEGTASFPGLARGQLVREALRLSHVLQT 250
R+ L R+PKF E+ + VL LG+R ++ + H +
Sbjct: 272 RDELEKFRIPKFKIEFGFSVTSVLDRLGLR--------------------SMSMYH--KA 309
Query: 251 CGIEVNEVGSIAYAAT---QVGIVNKFGEDSDVLYEVVADRPFMFFIQDEVTRQLLFTGR 421
C +E++E G+ A AAT G F E + + VAD PF+F I++E T +LF G+
Sbjct: 310 C-VEIDEEGAEAAAATADGDCGCSLDFVEPPKKI-DFVADHPFLFLIREEKTGTVLFVGQ 367
Query: 422 VSEPA 436
+ +P+
Sbjct: 368 IFDPS 372
>At2g35580.1 68415.m04357 serpin family protein / serine protease
inhibitor family protein similar to protein zx [Hordeum
vulgare subsp. vulgare] GI:19071, serpin [Triticum
aestivum] GI:1885350; contains Pfam profile PF00079:
Serpin (serine protease inhibitor)
Length = 374
Score = 38.7 bits (86), Expect = 0.002
Identities = 39/138 (28%), Positives = 67/138 (48%), Gaps = 5/138 (3%)
Frame = +2
Query: 38 LSDLRVEMNNLRERLVDVRLPKFTFEYTSRLNGVLRELGVRQ-----AFEGTASFPGLAR 202
L D + + ++ ERL R E + V++EL + + AFE + + G
Sbjct: 242 LPDEKDGLPSMLERLASTRGFLKDNEVLPSHSAVIKELKIPRFKFDFAFEASEALKGFG- 300
Query: 203 GQLVREALRLSHVLQTCGIEVNEVGSIAYAATQVGIVNKFGEDSDVLYEVVADRPFMFFI 382
LV + LS ++ IEV+EVGS A AA + + ++ VAD PF+F +
Sbjct: 301 --LV---VPLSMIMHKSCIEVDEVGSKAAAAAAFRGIGCRRPPPEK-HDFVADHPFLFIV 354
Query: 383 QDEVTRQLLFTGRVSEPA 436
++ + +LF G+V +P+
Sbjct: 355 KEYRSGLVLFLGQVMDPS 372
>At1g62170.1 68414.m07013 serpin family protein / serine protease
inhibitor family protein similar to phloem serpin-1
GI:9937311 from [Cucurbita maxima]; contains Pfam
profile PF00079: Serpin (serine protease inhibitor)
Length = 433
Score = 35.1 bits (77), Expect = 0.023
Identities = 13/30 (43%), Positives = 22/30 (73%)
Frame = +2
Query: 347 EVVADRPFMFFIQDEVTRQLLFTGRVSEPA 436
+ VAD PF+F I++E T +LF G++ +P+
Sbjct: 403 DFVADHPFLFLIREEQTGTVLFAGQIFDPS 432
>At5g49665.1 68418.m06148 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profiles PF00097: Zinc
finger, C3HC4 type (RING finger), PF00092: von
Willebrand factor type A domain
Length = 740
Score = 28.7 bits (61), Expect = 2.0
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Frame = -3
Query: 276 PTSLTSMPHVCRTCD--NLSASRTSCPRANPGNEAVPSKACLTPNSLSTPFKRDVYSN 109
P S +S CRT D +A +TS PR+ + + A P+S +P K ++ N
Sbjct: 57 PRSTSSPSLRCRTADAQTPTAEQTSTPRSATKSPRLSLAAISNPSSPRSPLKLSLFRN 114
>At2g33580.1 68415.m04115 protein kinase family protein /
peptidoglycan-binding LysM domain-containing protein
protein kinase [Arabidopsis thaliana] GI:2852449;
contains Pfam profiles PF01476: LysM domain, PF00069:
Protein kinase domain
Length = 664
Score = 28.7 bits (61), Expect = 2.0
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +3
Query: 261 KSMKLAA*LMQQHKLVS*ISLEKIPTSSTRWWPIDRSCSS 380
K L + L +++KL + + IPT++T W ID S SS
Sbjct: 306 KKKSLPSSLPEENKLFDSSTKQSIPTTTTTQWSIDLSNSS 345
>At1g05120.1 68414.m00514 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger
domain-containing protein similar to SP|P79051 DNA
repair protein rhp16 (RAD16 homolog)
{Schizosaccharomyces pombe}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain, PF00097: Zinc finger,
C3HC4 type (RING finger)
Length = 833
Score = 28.7 bits (61), Expect = 2.0
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Frame = +2
Query: 110 FEYTSRLNGVLRELGVRQAFEGTASFPGLARGQLVREALRLSHVLQTCGIE-VNEVGSIA 286
F+ ++++ + E +R E S + Q +++ L CG+ V VGS+
Sbjct: 658 FQTSTKIEALREE--IRFMVERDGSAKAIVFSQFTSFLDLINYTLGKCGVSCVQLVGSMT 715
Query: 287 YAATQVGIVNKFGEDSD 337
AA I NKF ED D
Sbjct: 716 MAARDTAI-NKFKEDPD 731
>At5g04040.1 68418.m00384 patatin-related contains Patatin domain
PF01734
Length = 825
Score = 28.3 bits (60), Expect = 2.7
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = -3
Query: 198 ANPGNEAVPSKACLTPNSLSTPFKRDVYSNVNLGNL-TST 82
++P + AVP TP+ S D+ SN N NL TST
Sbjct: 686 SSPNSPAVPPGGSFTPSPRSIAAHSDIESNSNSNNLGTST 725
>At4g21390.1 68417.m03090 S-locus lectin protein kinase family
protein contains Pfam profiles: PF00954 S-locus
glycoprotein family, PF00069 protein kinase domain,
PF01453 lectin (probable mannose binding)
Length = 849
Score = 28.3 bits (60), Expect = 2.7
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = +2
Query: 323 GEDSDVLYEVVADRPFMFFIQDEVTRQLLFTGRVSEPAIVGAARKL 460
GE+ ++YE + ++ FF+ DE T+Q L ++ I G AR L
Sbjct: 595 GEEKMLVYEYMPNKSLDFFLFDE-TKQALIDWKLRFSIIEGIARGL 639
>At1g75640.1 68414.m08788 leucine-rich repeat family protein / protein
kinase family protein contains protein kinase domain,
Pfam:PF00069; contains leucine-rich repeats, Pfam:PF00560
Length = 1140
Score = 27.9 bits (59), Expect = 3.5
Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 6/46 (13%)
Frame = +2
Query: 272 VGSIAYAATQVGIVNKFGEDSD------VLYEVVADRPFMFFIQDE 391
VGS+ Y A + G+ + ++SD VL E++ + + F +DE
Sbjct: 1004 VGSLGYIAPEAGLTGETSKESDVYSFGIVLLEILTGKKAVMFTEDE 1049
>At5g25480.1 68418.m03032 C-5 cytosine-specific DNA methylase family
protein contains Pfam profile PF00145: C-5
cytosine-specific DNA methylase
Length = 383
Score = 27.5 bits (58), Expect = 4.7
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = -2
Query: 397 GDFVLDEEHERSIGHHLVEDVGIFSKLIY-DTNLCCCIS 284
GD V D H+ + L+E G ++Y D+ CCC +
Sbjct: 260 GDSVPDSVHQYLVPVSLIERWGNAMDIVYPDSKRCCCFT 298
>At3g18070.1 68416.m02298 glycosyl hydrolase family 1 protein
contains Pfam PF00232 : Glycosyl hydrolase family 1
domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
similar to beta-mannosidase enzyme (GI:17226270)
[Lycopersicon esculentum]
Length = 501
Score = 27.5 bits (58), Expect = 4.7
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +2
Query: 56 EMNNLRERLVDVRLPKFTFEYTSRLNGVLRELGVRQ 163
E N + +V RLPKFT E + G + +G+ Q
Sbjct: 300 EYPNTLQNIVKERLPKFTEEEVKMVKGSIDFVGINQ 335
>At5g48310.1 68418.m05968 expressed protein
Length = 1156
Score = 27.1 bits (57), Expect = 6.2
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +3
Query: 288 MQQHKLVS*ISLEKIPTSSTRWWPI 362
+Q ++S SL + P + RWWPI
Sbjct: 473 VQGKAMISITSLTENPNDNVRWWPI 497
>At5g38620.1 68418.m04671 MADS-box protein (AGL73) contains Pfam
profile PF00319: SRF-type transcription factor
(DNA-binding and dimerisation domain)
Length = 349
Score = 27.1 bits (57), Expect = 6.2
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 5/76 (6%)
Frame = -2
Query: 424 DTPGEQQLPGDFVLDEEHERSIGHHLVEDVGIFSKLIYDTNLCCCISYAANFIDFNAT-- 251
+TP E + F + H+ + ++ DVG+ ++ DTN SY + D +
Sbjct: 269 NTPFESSIDDWFSDNTTHQETTSASILNDVGVDDQVSVDTN---PFSYFQSLEDADLVFQ 325
Query: 250 -CL--QDVR*SQCFTD 212
CL ++R S CF D
Sbjct: 326 RCLDGDNLRFSDCFND 341
>At4g12790.2 68417.m02007 ATP-binding family protein contains Pfam
domain, PF03029: Conserved hypothetical ATP binding
protein
Length = 271
Score = 27.1 bits (57), Expect = 6.2
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +2
Query: 257 IEVNEVGSIAYAATQVGIVNKFGEDSDV 340
I + + SI Y +Q+ + +FGED+DV
Sbjct: 229 INLRKEKSIQYVLSQIDVCIQFGEDADV 256
>At4g12790.1 68417.m02006 ATP-binding family protein contains Pfam
domain, PF03029: Conserved hypothetical ATP binding
protein
Length = 271
Score = 27.1 bits (57), Expect = 6.2
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +2
Query: 257 IEVNEVGSIAYAATQVGIVNKFGEDSDV 340
I + + SI Y +Q+ + +FGED+DV
Sbjct: 229 INLRKEKSIQYVLSQIDVCIQFGEDADV 256
>At2g40070.1 68415.m04923 expressed protein
Length = 607
Score = 27.1 bits (57), Expect = 6.2
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = +3
Query: 327 KIPTSSTRWWPIDRSCSSSRTKSPGNCCSPGVSPNPQSSG 446
++ SST + S +T SPG S G S P SSG
Sbjct: 141 RLANSSTESAARNHLTSRQQTSSPGLSSSSGASRRPSSSG 180
>At2g15320.1 68415.m01747 leucine-rich repeat family protein
contains leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611
Length = 382
Score = 27.1 bits (57), Expect = 6.2
Identities = 13/18 (72%), Positives = 16/18 (88%), Gaps = 1/18 (5%)
Frame = +2
Query: 2 NSLTG-LPRVLNSLSDLR 52
NSLTG LP+ +NSLS+LR
Sbjct: 158 NSLTGPLPKTMNSLSNLR 175
>At5g10290.1 68418.m01194 leucine-rich repeat family protein /
protein kinase family protein contains Pfam domains
PF00560: Leucine Rich Repeat and PF00069: Protein kinase
domain
Length = 613
Score = 26.6 bits (56), Expect = 8.2
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +2
Query: 5 SLTGLPRVLNSLSDLRVEMNNLRERLVDVRLPKFTF 112
SLTGLP +LN L D + + L ++ PK+ F
Sbjct: 161 SLTGLPNLLNLLLDSNSLSGQIPQSLFEI--PKYNF 194
>At3g48150.1 68416.m05251 cell division cycle family protein / CDC
family protein similar to cell division cycle protein 23
[Homo sapiens] GI:3283051, anaphase-promoting complex
subunit 8 [Homo sapiens] GI:6180017; contains Pfam
profile PF00515: TPR Domain
Length = 579
Score = 26.6 bits (56), Expect = 8.2
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = -2
Query: 346 VEDVGIFSKLIYDTNLCCCISYAAN 272
VED+ ++S ++Y C +SY A+
Sbjct: 305 VEDMDLYSNVLYAKEACAALSYLAH 329
>At1g77500.1 68414.m09025 expressed protein contains Pfam domains,
PF04782: Protein of unknown function (DUF632) and
PF04783: Protein of unknown function (DUF630)
Length = 879
Score = 26.6 bits (56), Expect = 8.2
Identities = 9/22 (40%), Positives = 20/22 (90%)
Frame = +2
Query: 29 LNSLSDLRVEMNNLRERLVDVR 94
+++L DL+V+++++R+RLV+ R
Sbjct: 806 ISALDDLKVDLDSMRKRLVEER 827
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,434,081
Number of Sequences: 28952
Number of extensions: 180685
Number of successful extensions: 613
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 589
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 609
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 772134480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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