Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_G17
         (569 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    27   1.5  
SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|ch...    27   1.9  
SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces po...    27   2.6  
SPCC736.13 |||short chain dehydrogenase|Schizosaccharomyces pomb...    27   2.6  
SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces po...    25   5.9  
SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub...    25   7.8  

>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1610

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +1

Query: 175  MLPTDLEPALSFCTHLLYKSAGIQAPPYQMVSLNENLD 288
            M+ +D EP +S C  LL  +      P+ MVS  E  +
Sbjct: 1281 MVESDYEPDVSLCPELLSLAIDFPGDPFVMVSKMEKYE 1318


>SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 815

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -2

Query: 418 PIKDCTSVDLQCRHHLPLSR 359
           P K+C +  L+C +H+P SR
Sbjct: 46  PCKNCKAGKLECTYHMPSSR 65


>SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 481

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 8/90 (8%)
 Frame = +1

Query: 208 FCTHLLYKSAGIQAPPYQMVS-LNENLDIDRA-------HANYRAITNLKRQFPQLRVFL 363
           F  HL  +S   +  P+QM+  +  +  ID         H N  AI  L  +FPQL  F 
Sbjct: 8   FSHHLSRESKAREKGPFQMLGRIKSSTGIDAISFSSGLPHPNKFAIRELSIKFPQLGCFK 67

Query: 364 TVGGDDDTEDPQKYNLLLESPQARTAFTNS 453
              G    E    +N+  +  +    F+ S
Sbjct: 68  EENGTYAKEVNVTFNIKADPSEGLLNFSQS 97


>SPCC736.13 |||short chain dehydrogenase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 339

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +1

Query: 217 HLLYKSAGIQAPPYQMVSLNENLDIDRAHANYRAITNL 330
           H+L  +AGI  PP+++      L I   + ++   T L
Sbjct: 123 HILVNNAGIMNPPFELTKDGYELQIQTNYLSHYLFTEL 160


>SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 622

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +1

Query: 427 QARTAFTNSALLLAEQYGFDGIDLSWQLPK 516
           Q  T F  S+L +A   G+D I L W L K
Sbjct: 531 QGVTEFVPSSLGVALAKGYDEIGLEWSLTK 560


>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
            Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1129

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -3

Query: 204  KSRLQVRRQHTCLRFSDIALAVIVAEDF 121
            K RLQ R  +   +FS + LAV+ A+ F
Sbjct: 1055 KKRLQKRLGYNDTQFSKVKLAVLQAQSF 1082


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,159,160
Number of Sequences: 5004
Number of extensions: 41394
Number of successful extensions: 136
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)