Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_G17
         (569 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28916| Best HMM Match : No HMM Matches (HMM E-Value=.)              77   1e-14
SB_25657| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)              75   5e-14
SB_55143| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)              69   2e-12
SB_38742| Best HMM Match : No HMM Matches (HMM E-Value=.)              54   6e-08
SB_48525| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)              49   3e-06
SB_24154| Best HMM Match : Glyco_hydro_18 (HMM E-Value=2.2e-32)        38   0.006
SB_45113| Best HMM Match : CemA (HMM E-Value=6)                        30   1.2  
SB_35620| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.0  
SB_41312| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_28048| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_50380| Best HMM Match : PMC2NT (HMM E-Value=2.4)                    28   4.7  
SB_9718| Best HMM Match : Metallothio_2 (HMM E-Value=1.3)              28   4.7  
SB_7559| Best HMM Match : Metallothio_2 (HMM E-Value=2)                28   4.7  
SB_47930| Best HMM Match : Vicilin_N (HMM E-Value=1.3)                 28   4.7  
SB_22053| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.7  
SB_20930| Best HMM Match : F5_F8_type_C (HMM E-Value=5.2e-08)          28   6.2  
SB_44353| Best HMM Match : GRP (HMM E-Value=4.9)                       28   6.2  
SB_19172| Best HMM Match : GRP (HMM E-Value=4.9)                       28   6.2  

>SB_28916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 807

 Score = 76.6 bits (180), Expect = 1e-14
 Identities = 45/130 (34%), Positives = 69/130 (53%), Gaps = 1/130 (0%)
 Frame = +1

Query: 127 LCYYDSKSYIRESQARMLPTDLEPALSFCTHLLYKSAGIQAPPYQMVSLNENLDIDRAHA 306
           +CY+ + +  R    + LP D++P L  CTH++Y  A I  P    +   E  D DR   
Sbjct: 401 VCYFTNWAQYRPDPVKFLPKDIDPLL--CTHIVYAFAKID-PATNKIGTYEWND-DRL-- 454

Query: 307 NYRAITNLKRQFPQLRVFLTVGGDDDTEDP-QKYNLLLESPQARTAFTNSALLLAEQYGF 483
            Y+ I +LK + P L+  L VGG +    P   ++ ++ S   RT F +S L L+++Y F
Sbjct: 455 -YKEINDLKLKNPSLKTLLAVGGWNHESGPVSPFSQMVASKSNRTTFISSLLQLSDKYDF 513

Query: 484 DGIDLSWQLP 513
           DG DL W+ P
Sbjct: 514 DGFDLDWEYP 523


>SB_25657| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
          Length = 829

 Score = 74.5 bits (175), Expect = 5e-14
 Identities = 42/142 (29%), Positives = 68/142 (47%)
 Frame = +1

Query: 130 CYYDSKSYIRESQARMLPTDLEPALSFCTHLLYKSAGIQAPPYQMVSLNENLDIDRAHAN 309
           CYY + S  R       P D++P L  CTH+L+  A +    +++    EN      H  
Sbjct: 25  CYYTNWSQYRPKGGTFWPEDIDPFL--CTHILFSFAKVNQTTHKLDIYEEN-----DHEL 77

Query: 310 YRAITNLKRQFPQLRVFLTVGGDDDTEDPQKYNLLLESPQARTAFTNSALLLAEQYGFDG 489
           Y+ I  LK+  P+L+  + VGG    E    ++ ++ + + R  F  SA+     +GFDG
Sbjct: 78  YQRINALKKINPKLKTQIAVGGWTHEEKNSPFSKMVATKEKRAIFIKSAIETLRTHGFDG 137

Query: 490 IDLSWQLPKRKPKKIRSSIGSF 555
           +DL W+ P  +    +S  G F
Sbjct: 138 LDLDWEYPGMRGGSPKSDKGRF 159



 Score = 70.1 bits (164), Expect = 1e-12
 Identities = 41/143 (28%), Positives = 68/143 (47%)
 Frame = +1

Query: 127 LCYYDSKSYIRESQARMLPTDLEPALSFCTHLLYKSAGIQAPPYQMVSLNENLDIDRAHA 306
           +CYY + S  R       P D++P L  CTH+++  + +    + M    +N D D    
Sbjct: 409 VCYYTNWSQYRPKGGTFWPEDIDPHL--CTHVIHSFSKVNLTTHVMEKYEKN-DFDL--- 462

Query: 307 NYRAITNLKRQFPQLRVFLTVGGDDDTEDPQKYNLLLESPQARTAFTNSALLLAEQYGFD 486
            Y+ I  LK+  P+L+  + VGG    E    ++ ++ + + R  F  SA+      GFD
Sbjct: 463 -YKRINALKKINPKLKTQIAVGGWTHEEKNSPFSKMVATKEKRAIFIKSAIETLRTNGFD 521

Query: 487 GIDLSWQLPKRKPKKIRSSIGSF 555
           G+DL W+ P  +    +S  G F
Sbjct: 522 GLDLDWEYPGMRGGSPKSDKGRF 544


>SB_55143| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
          Length = 270

 Score = 69.3 bits (162), Expect = 2e-12
 Identities = 40/130 (30%), Positives = 69/130 (53%), Gaps = 1/130 (0%)
 Frame = +1

Query: 127 LCYYDSKSYIRESQARMLPTDLEPALSFCTHLLYKSAGI-QAPPYQMVSLNENLDIDRAH 303
           +CY+ + S  R+ +A+  P D+ PA   CTHL+Y  A I Q     M   N+    D+ +
Sbjct: 22  VCYHTNWSQYRQGRAKFWPEDI-PA-DLCTHLMYSFAKINQKNELAMYEWND----DKLY 75

Query: 304 ANYRAITNLKRQFPQLRVFLTVGGDDDTEDPQKYNLLLESPQARTAFTNSALLLAEQYGF 483
             + A   LK++ P+L+  L VGG +       ++ ++++   R  F +S + +   +GF
Sbjct: 76  PRFNA---LKQKNPELKTLLAVGGWNHENANSPFSRMVKTAATRKVFIDSVIRILRTWGF 132

Query: 484 DGIDLSWQLP 513
           DG+DL W+ P
Sbjct: 133 DGLDLDWEYP 142


>SB_38742| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 438

 Score = 54.4 bits (125), Expect = 6e-08
 Identities = 35/129 (27%), Positives = 63/129 (48%)
 Frame = +1

Query: 127 LCYYDSKSYIRESQARMLPTDLEPALSFCTHLLYKSAGIQAPPYQMVSLNENLDIDRAHA 306
           +CYY + +  R   A+  P +++P+L  CTH++Y  A + A   ++     N       A
Sbjct: 25  VCYYTNWAQYR-GLAKYTPDNIDPSL--CTHIVYAFAKMNADNSKLAMFEWN-----DAA 76

Query: 307 NYRAITNLKRQFPQLRVFLTVGGDDDTEDPQKYNLLLESPQARTAFTNSALLLAEQYGFD 486
            Y+ + +LK     ++  L VGG +    P  +  ++ +   R  F + A+L    + FD
Sbjct: 77  MYKKVNDLKSS-SNMKTLLAVGGWNMGSGP--FQDMVSTASRRKIFIDDAILFLRNHMFD 133

Query: 487 GIDLSWQLP 513
           G+DL W+ P
Sbjct: 134 GLDLDWEYP 142


>SB_48525| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
          Length = 569

 Score = 48.8 bits (111), Expect = 3e-06
 Identities = 20/68 (29%), Positives = 37/68 (54%)
 Frame = +1

Query: 310 YRAITNLKRQFPQLRVFLTVGGDDDTEDPQKYNLLLESPQARTAFTNSALLLAEQYGFDG 489
           Y+   +LK + P L+  L VGG +       ++ ++ +  +R  F +S++ +  Q+ FDG
Sbjct: 187 YKEFNDLKLKNPGLKTLLAVGGWNHENYKSPFSRMVRTAASRKVFIDSSIAMLRQWNFDG 246

Query: 490 IDLSWQLP 513
            DL W+ P
Sbjct: 247 FDLDWEYP 254


>SB_24154| Best HMM Match : Glyco_hydro_18 (HMM E-Value=2.2e-32)
          Length = 561

 Score = 37.9 bits (84), Expect = 0.006
 Identities = 19/68 (27%), Positives = 34/68 (50%)
 Frame = +1

Query: 310 YRAITNLKRQFPQLRVFLTVGGDDDTEDPQKYNLLLESPQARTAFTNSALLLAEQYGFDG 489
           Y+ + +LK     ++  L VGG +    P  +  ++ +   R  F + A+L    + FDG
Sbjct: 2   YKKVNDLKSS-SNMKTLLAVGGWNMGSGP--FQDMVSTASRRKIFIDDAILFLRNHMFDG 58

Query: 490 IDLSWQLP 513
           +DL W+ P
Sbjct: 59  LDLDWEYP 66


>SB_45113| Best HMM Match : CemA (HMM E-Value=6)
          Length = 363

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +2

Query: 239 ASKLHHIKWFHSMRIWTLIGRTLIIERSQT*KDSFLN 349
           A+ LH + ++    +W L+G  L  +  Q  KDS+LN
Sbjct: 230 ANNLHGVDYYVKKVVWDLMGEVLEYKHQQGTKDSWLN 266


>SB_35620| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 271

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +2

Query: 239 ASKLHHIKWFHSMRIWTLIGRTLIIERSQT*KDSFLNC 352
           A+ LH + ++    +W L+G  L  +     KDS++NC
Sbjct: 139 ANNLHGVDYYVKKVVWDLMGEVLGYKSYHGEKDSWINC 176


>SB_41312| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 357

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +2

Query: 239 ASKLHHIKWFHSMRIWTLIGRTLIIERSQT*KDSFLN 349
           A+ LH + ++    +W L+G  L  +  Q  KDS+LN
Sbjct: 225 ANNLHGVDYYVKKVVWDLMGEVLEYKSLQGTKDSWLN 261


>SB_28048| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 125

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
 Frame = +2

Query: 188 TWSLLFRSAP----ICCTNLPASKLHHIKWFHSMRIWTLI-GRTLI 310
           ++++LF   P    I       S LHH+  FH++ +W L  GR L+
Sbjct: 29  SFNILFEGVPRDVRIAEVKRDLSTLHHVVSFHNVHVWALTSGRNLL 74


>SB_50380| Best HMM Match : PMC2NT (HMM E-Value=2.4)
          Length = 362

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +2

Query: 239 ASKLHHIKWFHSMRIWTLIGRTLIIERSQT*KDSFLN 349
           A+ L+ + ++    +W L+G  L  +  Q  KDS+LN
Sbjct: 230 ANNLYSVDYYVKKVVWDLMGEVLHYKHQQGTKDSWLN 266


>SB_9718| Best HMM Match : Metallothio_2 (HMM E-Value=1.3)
          Length = 279

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +2

Query: 239 ASKLHHIKWFHSMRIWTLIGRTLIIERSQT*KDSFLN 349
           A+ L+ + ++    +W L+G  L  +  Q  KDS+LN
Sbjct: 147 ANNLYSVDYYVKKVVWDLMGEVLHYKHQQGTKDSWLN 183


>SB_7559| Best HMM Match : Metallothio_2 (HMM E-Value=2)
          Length = 532

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +2

Query: 239 ASKLHHIKWFHSMRIWTLIGRTLIIERSQT*KDSFLN 349
           A+ L+ + ++    +W L+G  L  +  Q  KDS+LN
Sbjct: 400 ANNLYSVDYYVKKVVWDLMGEVLHYKHQQGTKDSWLN 436


>SB_47930| Best HMM Match : Vicilin_N (HMM E-Value=1.3)
          Length = 769

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = +2

Query: 53  PSPGYWR*RLRLPTTQHHLVAKAKSSATMTARAISENLKHVCCLRTW 193
           P P   R R   PT  H      K + T T R ++  +KHV  +RT+
Sbjct: 316 PEPTDKRRRDEPPTDIHERRRYRKVTKTKTIRTVTTTVKHVVTVRTY 362


>SB_22053| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1670

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = +2

Query: 53   PSPGYWR*RLRLPTTQHHLVAKAKSSATMTARAISENLKHVCCLRTW 193
            P P   R R   PT  H      K + T T R ++  +KHV  +RT+
Sbjct: 983  PEPTDKRRRDEPPTDIHERRRYRKVTKTKTIRTVTTTVKHVVTVRTY 1029


>SB_20930| Best HMM Match : F5_F8_type_C (HMM E-Value=5.2e-08)
          Length = 172

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = -1

Query: 479 PYCSARRRAELVKAVRACGDSNKRLYFCGSSVSSSPPTVKN 357
           P+  AR    +VK+V      +  +Y C S +SSSPP  +N
Sbjct: 120 PHVFARYIRIIVKSVFRSASIHVEIYGCVSRLSSSPPPREN 160


>SB_44353| Best HMM Match : GRP (HMM E-Value=4.9)
          Length = 361

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +2

Query: 239 ASKLHHIKWFHSMRIWTLIGRTLIIERSQT*KDSFLN 349
           A+ L+ + ++    +W L+G  L  +  Q  KDS+LN
Sbjct: 229 ANNLYGVDYYVKKVVWDLMGEVLEYKHQQGTKDSWLN 265


>SB_19172| Best HMM Match : GRP (HMM E-Value=4.9)
          Length = 278

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +2

Query: 239 ASKLHHIKWFHSMRIWTLIGRTLIIERSQT*KDSFLN 349
           A+ L+ + ++    +W L+G  L  +  Q  KDS+LN
Sbjct: 146 ANNLYGVDYYVKKVVWDLMGEVLEYKHQQGTKDSWLN 182


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,227,795
Number of Sequences: 59808
Number of extensions: 320264
Number of successful extensions: 1007
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 905
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1001
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1349364063
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)