Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_G16
(573 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_44479| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.2
SB_44146| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_17501| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.0
SB_53740| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0) 29 2.7
SB_6887| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_29132| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.7
SB_44095| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_20301| Best HMM Match : Drf_FH1 (HMM E-Value=0.43) 27 8.2
SB_1018| Best HMM Match : adh_short (HMM E-Value=2.1e-33) 27 8.2
SB_56913| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.2
>SB_44479| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 197
Score = 30.3 bits (65), Expect = 1.2
Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 9/71 (12%)
Frame = +1
Query: 364 NNAVTHKMHAKELDRQTVSYPWT-APKDLEGDVVF--------KVTIVKSYAVFWVGIES 516
++AVT K+ K DR+ +S PW P D+ V ++V+ + + G E
Sbjct: 100 DSAVTVKVRVKVRDREIISIPWVPEPPDISRPVTLSQNAVTSASASLVEEFCLSITGREK 159
Query: 517 APGXGSKSFDH 549
+ G G++ ++
Sbjct: 160 SGGSGTEDIEY 170
>SB_44146| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 310
Score = 29.9 bits (64), Expect = 1.5
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = -3
Query: 418 KQSVCLILWHASCGS--RRYLVHHS*GVARRYHRGLRSK 308
+ + L+LW + GS RR+++HH G + H+ L K
Sbjct: 37 RPKIALLLWVLNRGSKDRRFVIHHGQGNHKSNHKNLHKK 75
>SB_17501| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 819
Score = 29.5 bits (63), Expect = 2.0
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +1
Query: 187 TAVSSVKAGHSIDVVISGKTPEDK 258
T+V +K G I+VVIS K PED+
Sbjct: 72 TSVEQMKEGTVIEVVISAKVPEDE 95
>SB_53740| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
Length = 1980
Score = 29.1 bits (62), Expect = 2.7
Identities = 14/48 (29%), Positives = 20/48 (41%)
Frame = +3
Query: 126 RHDPRARC*CSDSTSALHHHYSCQLGKSWSFH*RGYQRQNTRRQNGRH 269
RHD C S ++ + C + W GY+RQ TR +H
Sbjct: 1789 RHDKGVECLPSCTSDGSYEELQCIRDECWCVDKYGYERQATRMIGRKH 1836
>SB_6887| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 875
Score = 29.1 bits (62), Expect = 2.7
Identities = 10/22 (45%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Frame = -3
Query: 316 RSKCRRSC-HPDELPGGCRPFC 254
R++C R C +P+ +PG C P C
Sbjct: 250 RTECSRDCPNPEPIPGQCCPIC 271
>SB_29132| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 450
Score = 28.3 bits (60), Expect = 4.7
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = -1
Query: 372 GVIWFTTVE-GLREGIIGAYGPSADDLVTLTSFQEDA 265
GV WF ++ +R I GA GP+ + T EDA
Sbjct: 285 GVSWFALLKVNIRSSIAGAGGPAMEAQTEFTKLLEDA 321
>SB_44095| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3051
Score = 27.9 bits (59), Expect = 6.2
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = +2
Query: 143 TLLMFRQYQRLTPSLQLSAR*KLVIPLTWLSAAKHPKTKWPASSW 277
+LL R Q P S V + WL+ + P++ WP S W
Sbjct: 1582 SLLEVRNSQNCDPIFVASVFVATVARVAWLTLSLWPRSLWPWSFW 1626
>SB_20301| Best HMM Match : Drf_FH1 (HMM E-Value=0.43)
Length = 346
Score = 27.5 bits (58), Expect = 8.2
Identities = 14/52 (26%), Positives = 22/52 (42%)
Frame = +1
Query: 97 PTGAPPSACFDMIPGHAADVQTVPAPYTITTAVSSVKAGHSIDVVISGKTPE 252
P G P C + PG+ DV +PA Y + G + ++ G P+
Sbjct: 274 PPGYGPDVCI-IPPGYGPDVYIIPADYGPDVCIIPPGYGPDVCIIPPGYGPD 324
>SB_1018| Best HMM Match : adh_short (HMM E-Value=2.1e-33)
Length = 717
Score = 27.5 bits (58), Expect = 8.2
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
Frame = +1
Query: 256 KMAGILL-EARQGDKIVGTWTV---SPDD-TFSQPLNCGEPNNAVT 378
K+ GI L ++G K+V +WTV +P F+ P G+P+ +T
Sbjct: 625 KVKGIFLWHVKKGGKVVSSWTVDLKTPGGAVFTGPPKGGKPDTTIT 670
>SB_56913| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1603
Score = 27.5 bits (58), Expect = 8.2
Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 3/89 (3%)
Frame = +1
Query: 205 KAGHSIDVVISGKTPE---DKMAGILLEARQGDKIVGTWTVSPDDTFSQPLNCGEPNNAV 375
++G +SG P+ G L AR ++ G T +P + +P P V
Sbjct: 1281 RSGEVTSTSVSGNPPKLSPVSEVGTLDFARMMEEFQGFGTSAPVPSLPEPPEI--PALLV 1338
Query: 376 THKMHAKELDRQTVSYPWTAPKDLEGDVV 462
T + +K+LDR+T P T P + E + V
Sbjct: 1339 TGSI-SKDLDRKTSGLPNTTPDNAERENV 1366
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,010,250
Number of Sequences: 59808
Number of extensions: 468241
Number of successful extensions: 1483
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1338
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1481
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1361520496
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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