Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_G13
(568 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g17880.1 68417.m02665 basic helix-loop-helix (bHLH) family pr... 30 0.94
At5g57000.1 68418.m07114 expressed protein similar to unknown pr... 28 3.8
At4g19810.1 68417.m02905 glycosyl hydrolase family 18 protein si... 28 5.0
At1g79890.1 68414.m09334 helicase-related similar to CHL1 potent... 28 5.0
At4g20190.1 68417.m02952 hypothetical protein 27 6.6
At3g16460.2 68416.m02097 jacalin lectin family protein contains ... 27 6.6
At3g16460.1 68416.m02098 jacalin lectin family protein contains ... 27 6.6
At2g46530.2 68415.m05803 transcriptional factor B3 family protei... 27 6.6
At2g46530.1 68415.m05802 transcriptional factor B3 family protei... 27 6.6
At5g65630.1 68418.m08256 DNA-binding bromodomain-containing prot... 27 8.7
At4g25390.2 68417.m03653 protein kinase family protein contains ... 27 8.7
At4g25390.1 68417.m03652 protein kinase family protein contains ... 27 8.7
At2g36730.1 68415.m04506 pentatricopeptide (PPR) repeat-containi... 27 8.7
>At4g17880.1 68417.m02665 basic helix-loop-helix (bHLH) family
protein bHLH protein, Arabidopsis thaliana,
PATCHX:E255557
Length = 589
Score = 30.3 bits (65), Expect = 0.94
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Frame = +3
Query: 189 NDPSKRFGTYAFRLPDDNGEG--GFWVSYEDPDTAGNKASYVKTKNLGGVSIMDLSMDDF 362
N+ FG++AF L D GE G W+S + +G A+ V N G S +
Sbjct: 253 NNGGGEFGSWAFNLNPDQGENDPGLWISEPNGVDSGLVAAPV-MNNGGNDSTSNSDSQPI 311
Query: 363 RGLCTG 380
LC G
Sbjct: 312 SKLCNG 317
>At5g57000.1 68418.m07114 expressed protein similar to unknown
protein (gb|AAF21159.1)
Length = 187
Score = 28.3 bits (60), Expect = 3.8
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = -2
Query: 273 LRKKPRSHLHHYHQE 229
L++KP HLHH+H+E
Sbjct: 87 LKEKPPRHLHHHHKE 101
>At4g19810.1 68417.m02905 glycosyl hydrolase family 18 protein
similar to chitinase/lysozyme GI:467689 from [Nicotiana
tabacum]
Length = 379
Score = 27.9 bits (59), Expect = 5.0
Identities = 13/41 (31%), Positives = 18/41 (43%)
Frame = +3
Query: 249 GGFWVSYEDPDTAGNKASYVKTKNLGGVSIMDLSMDDFRGL 371
G W+ Y+D + K Y K + L G + DD GL
Sbjct: 318 GTNWIGYDDNQSIVTKVRYAKQRGLLGYFSWHVGADDNSGL 358
>At1g79890.1 68414.m09334 helicase-related similar to CHL1 potential
helicase protein (GI:2632247) [Homo sapiens]; similar to
helicase GB:AAB06962 [Homo sapiens]
Length = 882
Score = 27.9 bits (59), Expect = 5.0
Identities = 13/53 (24%), Positives = 23/53 (43%)
Frame = +3
Query: 201 KRFGTYAFRLPDDNGEGGFWVSYEDPDTAGNKASYVKTKNLGGVSIMDLSMDD 359
+ F L ++NG+G +S T+G Y+K L G + +D+
Sbjct: 504 RAFSDMLVALTNNNGDGRIIISRTSSSTSGQHGGYIKYVMLTGAKLFSEVVDE 556
>At4g20190.1 68417.m02952 hypothetical protein
Length = 389
Score = 27.5 bits (58), Expect = 6.6
Identities = 19/88 (21%), Positives = 34/88 (38%)
Frame = -3
Query: 380 SSAKTTKIIHGKVHDGHTAKVLCFHVTSFVSGRVRIFVRNPEATFTIIIRKAEGIGPKTF 201
S+ +K I+ DG LC ++ F G+ R +++FT R ++
Sbjct: 195 SNTANSKSINS-FEDGFKCSALCLYLPGFSKGKPVRSSRKGDSSFT---RTTTMTSSQSM 250
Query: 200 ARIVDLTKMRTLSVLVGVNKFGANFWVA 117
AR + LS + +F W +
Sbjct: 251 ARTASIRDTAVLSARASLERFECGSWTS 278
>At3g16460.2 68416.m02097 jacalin lectin family protein contains
Pfam profile: PF01419 jacalin-like lectin domain;
similar to myrosinase binding protein [Brassica napus]
GI:1711296, GI:1655824, myrosinase-binding protein
homolog [Arabidopsis thaliana] GI:2997767; contains Pfam
profile PF01419 jacalin-like lectin family
Length = 647
Score = 27.5 bits (58), Expect = 6.6
Identities = 19/67 (28%), Positives = 27/67 (40%)
Frame = +3
Query: 3 TTGRTWKLDSDSEISGVPPIHADEGGEAGPYTKVQGLLSYPEICAKLINPNQNGKRPHLR 182
T G +W D S+ GV I+A GGE Y K + L Q+ + P
Sbjct: 262 TGGTSW--DDGSDYDGVTKIYASYGGEGIQYVKFDYVKGGVTKQGVLHGKQQSRQNPREF 319
Query: 183 KVNDPSK 203
+N P +
Sbjct: 320 VINHPDE 326
>At3g16460.1 68416.m02098 jacalin lectin family protein contains
Pfam profile: PF01419 jacalin-like lectin domain;
similar to myrosinase binding protein [Brassica napus]
GI:1711296, GI:1655824, myrosinase-binding protein
homolog [Arabidopsis thaliana] GI:2997767; contains Pfam
profile PF01419 jacalin-like lectin family
Length = 705
Score = 27.5 bits (58), Expect = 6.6
Identities = 19/67 (28%), Positives = 27/67 (40%)
Frame = +3
Query: 3 TTGRTWKLDSDSEISGVPPIHADEGGEAGPYTKVQGLLSYPEICAKLINPNQNGKRPHLR 182
T G +W D S+ GV I+A GGE Y K + L Q+ + P
Sbjct: 262 TGGTSW--DDGSDYDGVTKIYASYGGEGIQYVKFDYVKGGVTKQGVLHGKQQSRQNPREF 319
Query: 183 KVNDPSK 203
+N P +
Sbjct: 320 VINHPDE 326
>At2g46530.2 68415.m05803 transcriptional factor B3 family protein /
auxin-responsive factor AUX/IAA-related contains Pfam
profiles: PF02309 AUX/IAA family, PF02362 B3 DNA binding
domain
Length = 514
Score = 27.5 bits (58), Expect = 6.6
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +1
Query: 124 QKFAPNLLTPTKTESVLIFVRSTILANVLG-PMPSAFL 234
+ F+P+ LTPT T+ RS ++ + G P+ S+FL
Sbjct: 263 EPFSPSALTPTPTQQQSKSKRSRPISEITGSPVASSFL 300
>At2g46530.1 68415.m05802 transcriptional factor B3 family protein /
auxin-responsive factor AUX/IAA-related contains Pfam
profiles: PF02309 AUX/IAA family, PF02362 B3 DNA binding
domain
Length = 601
Score = 27.5 bits (58), Expect = 6.6
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +1
Query: 124 QKFAPNLLTPTKTESVLIFVRSTILANVLG-PMPSAFL 234
+ F+P+ LTPT T+ RS ++ + G P+ S+FL
Sbjct: 350 EPFSPSALTPTPTQQQSKSKRSRPISEITGSPVASSFL 387
>At5g65630.1 68418.m08256 DNA-binding bromodomain-containing protein
similar to 5.9 kb fsh membrane protein [Drosophila
melanogaster] GI:157455; contains Pfam profile PF00439:
Bromodomain
Length = 590
Score = 27.1 bits (57), Expect = 8.7
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +3
Query: 147 NPNQNGKRPHLRKVNDPSKRFGTYA 221
NPN N +R + K D S FG+YA
Sbjct: 44 NPNPNFERSNSSKQCDDSSEFGSYA 68
>At4g25390.2 68417.m03653 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 497
Score = 27.1 bits (57), Expect = 8.7
Identities = 17/62 (27%), Positives = 30/62 (48%)
Frame = +3
Query: 147 NPNQNGKRPHLRKVNDPSKRFGTYAFRLPDDNGEGGFWVSYEDPDTAGNKASYVKTKNLG 326
N + + +RP R+ + S R T +F + G+GGF V + + G + VK + G
Sbjct: 74 NASSSPRRPSPREFSYSSLRRATGSFSQANRLGQGGFGVVFRGTISGGENVA-VKVMDSG 132
Query: 327 GV 332
+
Sbjct: 133 SL 134
>At4g25390.1 68417.m03652 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 651
Score = 27.1 bits (57), Expect = 8.7
Identities = 17/62 (27%), Positives = 30/62 (48%)
Frame = +3
Query: 147 NPNQNGKRPHLRKVNDPSKRFGTYAFRLPDDNGEGGFWVSYEDPDTAGNKASYVKTKNLG 326
N + + +RP R+ + S R T +F + G+GGF V + + G + VK + G
Sbjct: 74 NASSSPRRPSPREFSYSSLRRATGSFSQANRLGQGGFGVVFRGTISGGENVA-VKVMDSG 132
Query: 327 GV 332
+
Sbjct: 133 SL 134
>At2g36730.1 68415.m04506 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 501
Score = 27.1 bits (57), Expect = 8.7
Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = -3
Query: 224 EGIGPKTFARIVDLTKMRTLSVLVGVNKFG-ANFW 123
EGIG K R+++L R+ ++++ N+F A W
Sbjct: 401 EGIGEKVKKRLIELEPKRSGNLVIVANRFAEARMW 435
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,086,547
Number of Sequences: 28952
Number of extensions: 292485
Number of successful extensions: 743
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 724
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 741
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1092379416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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