Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_G12
(624 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1259.09c |||pyruvate dehydrogenase protein x component|Schiz... 41 1e-04
SPCC794.07 |||dihydrolipoamide S-acetyltransferase E2 |Schizosac... 37 0.003
SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 compon... 32 0.077
SPAC26A3.04 |rpl2002|rpl20, rpl20-2|60S ribosomal protein L20|Sc... 30 0.31
SPAC3A12.10 |rpl2001|rpl20-1, rpl20, yl17b, rpl18a-2|60S ribosom... 30 0.31
SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub... 28 0.95
SPAC5H10.11 |gmh1||alpha-1,2-galactosyltransferase Gmh1|Schizosa... 28 1.3
SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M... 27 1.7
SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|ch... 26 3.8
SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr ... 26 5.1
SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual 25 6.7
SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13... 25 8.9
>SPCC1259.09c |||pyruvate dehydrogenase protein x
component|Schizosaccharomyces pombe|chr 3|||Manual
Length = 456
Score = 41.1 bits (92), Expect = 1e-04
Identities = 20/83 (24%), Positives = 42/83 (50%)
Frame = +2
Query: 350 IRWRRFHTNQILNKIVAFKLSDIGEGIREVVIKEWFVKVGDTVEQFDNICEVQSDKAAVT 529
++ R FH + + F++ + + E I +W K GD+ + D + EV++DKA +
Sbjct: 21 VKQRYFHCSALNGVASMFRMPALSPTMEEGNITKWHFKEGDSFKSGDILLEVETDKATMD 80
Query: 530 ITSRYDGVITRLYHEVDQTALVG 598
+ + +G++ ++ E VG
Sbjct: 81 VEVQDNGILAKVLIEKGSNIPVG 103
>SPCC794.07 |||dihydrolipoamide S-acetyltransferase E2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 483
Score = 36.7 bits (81), Expect = 0.003
Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = +2
Query: 461 KVGDTVEQFDNICEVQSDKAAVTITSRYDGVITRLYHEV-DQTALVGNPL 607
K+GD +E D +CE+++DKA + + +G + ++ E + VG PL
Sbjct: 76 KIGDKIEPGDVLCEIETDKAQIDFEQQDEGYLAKILIETGTKDVPVGKPL 125
>SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 component
of oxoglutarate dehydrogenase complex
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 31.9 bits (69), Expect = 0.077
Identities = 21/96 (21%), Positives = 40/96 (41%)
Frame = +2
Query: 332 SSNEGQIRWRRFHTNQILNKIVAFKLSDIGEGIREVVIKEWFVKVGDTVEQFDNICEVQS 511
S + + W R+ + +I K E I E + +W + G+ V + + I V++
Sbjct: 29 SKSMANVLWARYASTRI-------KTPPFPESITEGTLAQWLKQPGEYVNKDEEIASVET 81
Query: 512 DKAAVTITSRYDGVITRLYHEVDQTALVGNPLIDID 619
DK +T+ GV+ + T + + ID
Sbjct: 82 DKIDAPVTAPDAGVLKEQLVKEGDTITIDQDIAVID 117
>SPAC26A3.04 |rpl2002|rpl20, rpl20-2|60S ribosomal protein
L20|Schizosaccharomyces pombe|chr 1|||Manual
Length = 176
Score = 29.9 bits (64), Expect = 0.31
Identities = 23/74 (31%), Positives = 35/74 (47%)
Frame = +2
Query: 236 NTTNAGRAHKVWLLMQSDRHRSSFTSNIILKCSSNEGQIRWRRFHTNQILNKIVAFKLSD 415
+TT G ++ M + RHR+ F S ILK E + RR + Q+LN + F L
Sbjct: 95 DTTRVGAVEAMYADMAA-RHRARFRSIRILKVVEVEKKEDVRRNYVKQLLNPHLKFPLPH 153
Query: 416 IGEGIREVVIKEWF 457
G+ + K+ F
Sbjct: 154 RRTGVVGLAGKKVF 167
>SPAC3A12.10 |rpl2001|rpl20-1, rpl20, yl17b, rpl18a-2|60S ribosomal
protein L20a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 176
Score = 29.9 bits (64), Expect = 0.31
Identities = 23/74 (31%), Positives = 35/74 (47%)
Frame = +2
Query: 236 NTTNAGRAHKVWLLMQSDRHRSSFTSNIILKCSSNEGQIRWRRFHTNQILNKIVAFKLSD 415
+TT G ++ M + RHR+ F S ILK E + RR + Q+LN + F L
Sbjct: 95 DTTRVGAVEAMYADMAA-RHRARFRSIRILKVVEVEKKEDVRRNYVKQLLNPHLKFPLPH 153
Query: 416 IGEGIREVVIKEWF 457
G+ + K+ F
Sbjct: 154 RRTGVVGLAGKKVF 167
>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1129
Score = 28.3 bits (60), Expect = 0.95
Identities = 18/41 (43%), Positives = 22/41 (53%)
Frame = -3
Query: 541 ATCDSNSCLVALYFTNIVKLFYCITDFDEPFFNHDFSDSFA 419
ATC NS L +L+FTNI + T + P N D DS A
Sbjct: 237 ATCYMNSLLQSLFFTNIFRK----TVYKIPTDNDDSRDSVA 273
>SPAC5H10.11 |gmh1||alpha-1,2-galactosyltransferase
Gmh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 329
Score = 27.9 bits (59), Expect = 1.3
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +2
Query: 245 NAGRAHKVWLLMQSDRHRSSFTSNIILKCSSN 340
N ++H++ +L+ SD + SF SN++ C N
Sbjct: 80 NEPKSHEIVMLLASDGNVGSFESNLLDDCFKN 111
>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1115
Score = 27.5 bits (58), Expect = 1.7
Identities = 24/97 (24%), Positives = 49/97 (50%), Gaps = 3/97 (3%)
Frame = +2
Query: 314 NIILKCSSNEGQIRWRRFHTNQILNKIVAF--KLSDIGEGIREVVIKEWFVKVGD-TVEQ 484
N +L C S G+I R ++ Q +NK+VA +SDI ++ + ++ G ++
Sbjct: 177 NRLLCCGSTNGEIILRDPNSFQPVNKVVAHTGTISDIDTSGNLLLSCGYSLRHGTYMLDP 236
Query: 485 FDNICEVQSDKAAVTITSRYDGVITRLYHEVDQTALV 595
F + ++++ + V I I R++ ++ TA+V
Sbjct: 237 FVKVWDLRNLSSLVPIPFPAGPTIIRMHPKLSTTAVV 273
>SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 867
Score = 26.2 bits (55), Expect = 3.8
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -1
Query: 327 FNIILDVKLERCLSLCINNHTLWARPALVVFTTHF 223
F +I + + CL+L + LWA A+ +F T F
Sbjct: 423 FPVIDNREQNNCLALLVMVSLLWATEAIPLFVTSF 457
>SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 293
Score = 25.8 bits (54), Expect = 5.1
Identities = 12/39 (30%), Positives = 15/39 (38%)
Frame = -3
Query: 592 KSCLIYFMVKSCDNTIVATCDSNSCLVALYFTNIVKLFY 476
+ C F CD I T D CL + + V FY
Sbjct: 179 RRCGDIFCALHCDRNIPLTMDVKFCLAGSLYRSCVSCFY 217
>SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 25.4 bits (53), Expect = 6.7
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Frame = -3
Query: 481 FYCITDFDEPFFN--HDFSDSFANIRQLKSDNFIENLICVETPPS 353
FY + DF + + + +D FANI + + E+ I V+ PS
Sbjct: 370 FYVLIDFLYLYLSIARESADDFANITKAVDPSLFESCIRVQNAPS 414
>SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 777
Score = 25.0 bits (52), Expect = 8.9
Identities = 15/61 (24%), Positives = 26/61 (42%)
Frame = +2
Query: 368 HTNQILNKIVAFKLSDIGEGIREVVIKEWFVKVGDTVEQFDNICEVQSDKAAVTITSRYD 547
HT IL I + + + + ++K W + G+ V DN + + SR+D
Sbjct: 548 HTGAILKLIYISQGTQVVSAAADGLVKVWSLSSGECVATLDN-----HEDRVWALASRFD 602
Query: 548 G 550
G
Sbjct: 603 G 603
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,319,385
Number of Sequences: 5004
Number of extensions: 43347
Number of successful extensions: 132
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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