Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_G12
(624 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_42465| Best HMM Match : 2-oxoacid_dh (HMM E-Value=0) 53 2e-07
SB_10000| Best HMM Match : 2-oxoacid_dh (HMM E-Value=0) 43 2e-04
SB_29025| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.11
SB_27848| Best HMM Match : zf-C2H2 (HMM E-Value=1.49995e-41) 29 4.1
SB_47527| Best HMM Match : Alpha_E2_glycop (HMM E-Value=2.4) 28 5.4
SB_57150| Best HMM Match : ThiF (HMM E-Value=2.8e-35) 28 5.4
SB_35703| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_30672| Best HMM Match : Colipase (HMM E-Value=6.5) 27 9.4
SB_16151| Best HMM Match : CLN3 (HMM E-Value=2.5) 27 9.4
SB_4257| Best HMM Match : Collagen (HMM E-Value=0.00073) 27 9.4
>SB_42465| Best HMM Match : 2-oxoacid_dh (HMM E-Value=0)
Length = 441
Score = 53.2 bits (122), Expect = 2e-07
Identities = 23/35 (65%), Positives = 30/35 (85%)
Frame = +2
Query: 518 AAVTITSRYDGVITRLYHEVDQTALVGNPLIDIDV 622
A+VTITSR+DGVI +LY+EVD A VG PL+DI++
Sbjct: 28 ASVTITSRFDGVIKKLYYEVDDIAKVGQPLVDIEL 62
>SB_10000| Best HMM Match : 2-oxoacid_dh (HMM E-Value=0)
Length = 382
Score = 42.7 bits (96), Expect = 2e-04
Identities = 16/41 (39%), Positives = 27/41 (65%)
Frame = +2
Query: 443 IKEWFVKVGDTVEQFDNICEVQSDKAAVTITSRYDGVITRL 565
I W K GDT+E D +CE+++DKA +T+ + GV+ ++
Sbjct: 6 IVSWLKKEGDTIEPGDALCEIETDKATLTLDTDEQGVLAKI 46
>SB_29025| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 431
Score = 33.9 bits (74), Expect = 0.11
Identities = 16/49 (32%), Positives = 30/49 (61%)
Frame = +2
Query: 422 EGIREVVIKEWFVKVGDTVEQFDNICEVQSDKAAVTITSRYDGVITRLY 568
E + E I+ W VGD V + + + E+++DK ++ +T+ +GVI L+
Sbjct: 57 ESVTEGDIR-WDQAVGDAVAEDEVVGEIETDKTSIPVTAPANGVIEELF 104
>SB_27848| Best HMM Match : zf-C2H2 (HMM E-Value=1.49995e-41)
Length = 257
Score = 28.7 bits (61), Expect = 4.1
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
Frame = +2
Query: 200 SAMLFLMRKCVVNTTNAGRAHKVWLLMQSDRHRSS----FTSNIILKCSSNEGQIRWRRF 367
S +L MR+ V+ T + K WL H+SS FT +I K SN ++
Sbjct: 80 STLLARMRQSQVSETQERQPMKTWLRASDSNHKSSKKKIFTCSICEKIFSNSISLKQHMI 139
Query: 368 -HTNQ 379
H+N+
Sbjct: 140 VHSNR 144
>SB_47527| Best HMM Match : Alpha_E2_glycop (HMM E-Value=2.4)
Length = 429
Score = 28.3 bits (60), Expect = 5.4
Identities = 17/76 (22%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Frame = +2
Query: 305 FTSNIILKCSSNEGQIRWRRFHTNQILNKIVAFKLSDIGEGIREVV--IKEWFVKVGDTV 478
F I+ +N GQ++W + + + K S GE IR V + + G
Sbjct: 24 FIRRTIMAGETNTGQVKWTHMAPSHAVKRDAGPKYSRFGERIRHVTPGALQCSMFCGGKQ 83
Query: 479 EQFDNICEVQSDKAAV 526
+++N ++++D+ A+
Sbjct: 84 CKYENPNKIKTDEMAI 99
>SB_57150| Best HMM Match : ThiF (HMM E-Value=2.8e-35)
Length = 1026
Score = 28.3 bits (60), Expect = 5.4
Identities = 17/76 (22%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Frame = +2
Query: 305 FTSNIILKCSSNEGQIRWRRFHTNQILNKIVAFKLSDIGEGIREVV--IKEWFVKVGDTV 478
F I+ +N GQ++W + + + K S GE IR V + + G
Sbjct: 917 FIRRTIMAGETNTGQVKWTHMAPSHAVKRDAGPKYSRFGERIRHVTPGALQCSMFCGGKQ 976
Query: 479 EQFDNICEVQSDKAAV 526
+++N ++++D+ A+
Sbjct: 977 CKYENPNKIKTDEMAI 992
>SB_35703| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 873
Score = 27.5 bits (58), Expect = 9.4
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -3
Query: 550 TIVATCDSNSCLVALYFTN 494
T + TCD+ CL LYF N
Sbjct: 306 TSIPTCDTMKCLFGLYFDN 324
>SB_30672| Best HMM Match : Colipase (HMM E-Value=6.5)
Length = 305
Score = 27.5 bits (58), Expect = 9.4
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = -3
Query: 547 IVATCDSNSCLVALYFTNIVKLFYCITDFDEPFFNHDFSDSFA 419
+V +NSCL+ F + KL+Y + + F NH S S A
Sbjct: 159 LVEPLKANSCLMPSKFLHTRKLYYLYSFALDIFSNHQASRSIA 201
>SB_16151| Best HMM Match : CLN3 (HMM E-Value=2.5)
Length = 217
Score = 27.5 bits (58), Expect = 9.4
Identities = 18/62 (29%), Positives = 26/62 (41%)
Frame = +2
Query: 104 LVVFAFVRARFAGSRHASRFQLK*IYIKIINISAMLFLMRKCVVNTTNAGRAHKVWLLMQ 283
L AF A F S H + L + + S +LF+ R C R H++W+L
Sbjct: 45 LTTLAFPNAPFKPSSHFKFYTLAFGVSRFLGGSELLFIYRLC-PRILPYARIHRLWVLSL 103
Query: 284 SD 289
D
Sbjct: 104 LD 105
>SB_4257| Best HMM Match : Collagen (HMM E-Value=0.00073)
Length = 863
Score = 27.5 bits (58), Expect = 9.4
Identities = 16/48 (33%), Positives = 27/48 (56%)
Frame = -1
Query: 537 LVIVTAALSLCTSQILSNCSTVSPTLTNHSLITTSRIPSPISDSLKAT 394
++I+ ++ +S + S+ ST+SPT + S T S PS S + AT
Sbjct: 134 IIIIIIIITSSSSSLSSSSSTISPTKLSSSSSTIS--PSQSSSTTAAT 179
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,433,321
Number of Sequences: 59808
Number of extensions: 323053
Number of successful extensions: 845
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 844
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1548368000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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