Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_G11
         (555 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces ...    28   0.80 
SPBC365.16 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    28   0.80 
SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces pom...    26   4.3  
SPBC21C3.11 |ubx4||UBX domain protein Ubx4 |Schizosaccharomyces ...    26   4.3  
SPAC22E12.05c |rer1||Rer1 family protein|Schizosaccharomyces pom...    25   7.5  
SPAC11D3.06 |||MatE family transporter|Schizosaccharomyces pombe...    25   7.5  
SPAC2E12.02 |hsf1|hstf, hsf|transcription factor Hsf1|Schizosacc...    25   7.5  
SPAC22H10.05c |||mRNA cleavage and polyadenylation specificity f...    25   9.9  
SPBC685.09 |orc2|orp2|origin recognition complex subunit Orc2|Sc...    25   9.9  

>SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 571

 Score = 28.3 bits (60), Expect = 0.80
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 359 FGGKSPFVSTTSPSFNRYVPPYLFPD 282
           F  +SPF++ TS    RY+P   FP+
Sbjct: 542 FSQESPFLNWTSHHLQRYIPKNWFPE 567


>SPBC365.16 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 277

 Score = 28.3 bits (60), Expect = 0.80
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
 Frame = -3

Query: 382 LRTCYIESLAASRLLFRPLHRLSTDMYRRTYFQMS-----LDMRRHLLRMTVVR 236
           L T  + +  A + +  PLH LS D+Y R    +S     + +R+HLL+ T  R
Sbjct: 185 LITAQLLTPCAVQFISTPLHLLSLDIYNRGGPNISAANRVMQVRKHLLKSTFAR 238


>SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1185

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +2

Query: 215 SRVLGALPYHSHPE*VPSHIKTHLEIGTAV 304
           +R+L +     HPE +P H+ TH   GTAV
Sbjct: 758 ARLLISAIREKHPE-LPIHVHTHDSAGTAV 786


>SPBC21C3.11 |ubx4||UBX domain protein Ubx4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 425

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +1

Query: 319 DGEVVETKG-DLPPNFQYNTFEDLDNFFPEYFMNLGNLLEELP 444
           +G+V E K  DL      N  +D+   FP+Y ++   LLE LP
Sbjct: 181 NGDVKEKKNADLMDIESENKKDDIVESFPKYPVDAHKLLEPLP 223


>SPAC22E12.05c |rer1||Rer1 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 184

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -3

Query: 127 GWYLICRTCLW*LIPFTCVIYLLSIFVHEYTRRF 26
           GWY++C         +T  IYLL++F+   T +F
Sbjct: 56  GWYIVC---------YTLAIYLLNLFLAFLTPKF 80


>SPAC11D3.06 |||MatE family transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 455

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
 Frame = +1

Query: 106 FDKLGTNLISESLCSEF*IRNCAGKMRGFIILSVLYLQ--STWSFAVP 243
           FD LG+NL       E  I        GFI+LS+LYL     W ++ P
Sbjct: 69  FDTLGSNLWGAGKKQELGIL----LQTGFIVLSILYLPICLVWWYSKP 112


>SPAC2E12.02 |hsf1|hstf, hsf|transcription factor
           Hsf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 609

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
 Frame = +1

Query: 208 LYLQSTWSFAVPQSSGVGAFAYQDSSGNRYGGTYRLKDGEVVETKGDLPPNF-QYNTFED 384
           LY  +  S     +S  G+ +    SGN    T  L+  + V+   +  P++  YN  + 
Sbjct: 407 LYPVNNTSSEQHHNSYRGSVSNSQPSGNLSEST-NLQPVQPVDYMSNSNPSYGSYNAEDQ 465

Query: 385 LDNFFPEYFMN 417
           L NF P Y M+
Sbjct: 466 LTNFHPGYAMD 476


>SPAC22H10.05c |||mRNA cleavage and polyadenylation specificity
           factor complex subunit |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 456

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +2

Query: 434 KSCQRSTISRITEGYLFPRCRIPIMVSA-PSQ 526
           +SC ++++ +I E Y   + R PI V+  P+Q
Sbjct: 115 RSCGKTSVLKILESYALKQSRHPICVNLDPTQ 146


>SPBC685.09 |orc2|orp2|origin recognition complex subunit
           Orc2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 6/52 (11%)
 Frame = -3

Query: 268 RRHLLRMTVVR------QSSKYSGDIKHLI**NPSFCPRNCVFKTPNTMTPK 131
           R H LR+++ R       +S  S D+K +   N S  P+  V + P+T+TP+
Sbjct: 10  RYHFLRVSLTRVAHLVFANSHESNDLKMVE--NVSSTPKKGVLEDPSTLTPE 59


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,437,446
Number of Sequences: 5004
Number of extensions: 54005
Number of successful extensions: 161
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)