Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_G11
         (555 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_1145 + 9073973-9074281,9075440-9075998,9076088-9076241,907...    29   2.5  
12_02_1279 + 27510605-27513301                                         28   4.4  
12_02_0722 - 22521909-22521932,22522291-22522419,22522976-225242...    28   4.4  
09_02_0587 - 10948888-10949124,10949281-10949393,10949830-109502...    28   5.8  
10_02_0007 - 4100613-4100993,4101026-4101074,4102966-4103393           27   7.6  

>01_01_1145 +
           9073973-9074281,9075440-9075998,9076088-9076241,
           9077475-9077565,9077722-9077793,9077879-9078390,
           9078854-9078923,9079514-9079579,9080266-9080570,
           9080872-9081006,9081141-9081204,9081429-9081574,
           9081669-9081773,9082310-9082490
          Length = 922

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = +1

Query: 349 LPPNFQYNTFEDLDNFFPEYFMNLGNL--LEELPAFNNFQNYGGLP 480
           L  NFQ N +ED +    E F + G+L  LE+  AF++F+N    P
Sbjct: 831 LEKNFQRNVYEDFEQLTLE-FHHKGDLYGLEKYWAFHHFRNQDSSP 875


>12_02_1279 + 27510605-27513301
          Length = 898

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +1

Query: 352 PPNFQYNTFEDLDNFFPEYFMNLGNLLEELPAFNN 456
           PPNF Y T  +   +F   F +     EELPA  N
Sbjct: 362 PPNFNYMTLGEGIGYFANKFASPDTSGEELPACRN 396


>12_02_0722 -
           22521909-22521932,22522291-22522419,22522976-22524242,
           22524659-22525461
          Length = 740

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = -3

Query: 334 RPLHRLSTDMYRRTYFQMS-LDMRRHLLRMTVVRQSSKYSGD 212
           R + R+ST    + + Q + L + RHL R  +++Q SKY GD
Sbjct: 689 RKVWRISTPFGMQPFIQAARLLLERHL-RTILIKQRSKYDGD 729


>09_02_0587 -
           10948888-10949124,10949281-10949393,10949830-10950293,
           10951223-10951766,10951902-10951971
          Length = 475

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +3

Query: 132 FGVIVFGVLNTQLRGQNEGFYHIKCFISPEY 224
           F V +FG       GQ +GF  I C + P Y
Sbjct: 7   FAVFLFGTALDGAVGQEDGFLSIDCGMDPNY 37


>10_02_0007 - 4100613-4100993,4101026-4101074,4102966-4103393
          Length = 285

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = -3

Query: 340 LFRPLHRLSTDMYRRTYFQMSLDMRRHLLRMTVVRQSSKYSGD 212
           L RPL  L  +    ++    + ++RHL    +VR + ++ GD
Sbjct: 172 LLRPLTALEKEGTAESHSPPPMKVKRHLTHPPIVRAAGQFQGD 214


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,238,278
Number of Sequences: 37544
Number of extensions: 326537
Number of successful extensions: 753
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 751
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1257681096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)