Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_G11
         (555 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2306| Best HMM Match : MecA_N (HMM E-Value=2.3)                     31   0.84 
SB_58595| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_42355| Best HMM Match : EGF (HMM E-Value=2.9e-05)                   29   2.6  
SB_6954| Best HMM Match : RVT_1 (HMM E-Value=0)                        29   2.6  
SB_26860| Best HMM Match : Melittin (HMM E-Value=1.5)                  29   2.6  
SB_57| Best HMM Match : zf-C2H2 (HMM E-Value=0)                        28   4.5  
SB_16515| Best HMM Match : Extensin_2 (HMM E-Value=0.12)               27   7.8  

>SB_2306| Best HMM Match : MecA_N (HMM E-Value=2.3)
          Length = 262

 Score = 30.7 bits (66), Expect = 0.84
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -2

Query: 482 KGNPP*FWKLLNAGNSSNRLPKFIKYSGKK 393
           K NP  FW    A   SN +P  + Y+G K
Sbjct: 48  KSNPKKFWSYFRAKTKSNSIPDTVLYNGSK 77


>SB_58595| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1462

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -2

Query: 482 KGNPP*FWKLLNAGNSSNRLPKFIKYSGKK 393
           K NP  FW    A   SN +P  + ++G K
Sbjct: 432 KSNPKKFWSYFRAKTKSNSIPDTVTHNGSK 461


>SB_42355| Best HMM Match : EGF (HMM E-Value=2.9e-05)
          Length = 241

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -3

Query: 469 RNSGNC*TLATLLIGCLSS*NIRGRNCPDLRT 374
           +N G+C T       C  + N  G+NC DL++
Sbjct: 167 KNGGSCVTAGANAYNCTCTSNYMGKNCDDLKS 198


>SB_6954| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 943

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -2

Query: 482 KGNPP*FWKLLNAGNSSNRLPKFIKYSGKK 393
           K NP  FW    A   SN +P  + ++G K
Sbjct: 24  KSNPKKFWSYFRAKTKSNSIPDTVTHNGSK 53


>SB_26860| Best HMM Match : Melittin (HMM E-Value=1.5)
          Length = 595

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +2

Query: 308 IG*KTVKWSKQKATCRQTFNITRSKIWTISSPN 406
           +G K V+  K  AT + +  ITR ++W IS+P+
Sbjct: 57  VGHKLVQGEKTTATKKTSRKITRVELWLISTPS 89


>SB_57| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 1498

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +3

Query: 3   HSVHNSSTNRRVYSCTNIDNKYITQVKGISHHKQVR 110
           H   +S+T  +   C++ D  + T+   I+HHK+V+
Sbjct: 815 HMRFHSNTMTKSLKCSHCDEMFPTRANLIAHHKEVQ 850


>SB_16515| Best HMM Match : Extensin_2 (HMM E-Value=0.12)
          Length = 917

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +1

Query: 289 NRYGGTYRLKDGEVVETKGDLPPNFQYNTFEDLDN 393
           N Y    RL+DGE+V  +  + PN    + +D+DN
Sbjct: 214 NSYIRLGRLQDGEIVPPRHRIEPNVVSISQDDIDN 248


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,921,933
Number of Sequences: 59808
Number of extensions: 397474
Number of successful extensions: 946
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 821
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 946
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1288581898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)