Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_G11
         (555 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g60810.1 68414.m06845 ATP citrate-lyase -related similar to A...    29   1.6  
At1g49360.1 68414.m05533 F-box family protein contains Pfam PF00...    29   1.6  
At5g44270.1 68418.m05418 hypothetical protein                          29   2.1  
At1g20575.1 68414.m02567 dolichyl-phosphate beta-D-mannosyltrans...    28   3.6  
At4g17220.1 68417.m02590 expressed protein                             28   4.8  
At2g25660.1 68415.m03075 expressed protein                             27   6.4  
At2g20650.2 68415.m02422 zinc finger (C3HC4-type RING finger) fa...    27   6.4  
At2g20650.1 68415.m02421 zinc finger (C3HC4-type RING finger) fa...    27   6.4  
At5g04870.1 68418.m00510 calcium-dependent protein kinase isofor...    27   8.4  
At4g01590.1 68417.m00207 expressed protein                             27   8.4  
At2g04300.1 68415.m00422 leucine-rich repeat protein kinase, put...    27   8.4  

>At1g60810.1 68414.m06845 ATP citrate-lyase -related similar to ATP
           citrate-lyase GI:949989 from [Rattus norvegicus]
          Length = 423

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 13/65 (20%)
 Frame = +1

Query: 331 VETKGDLPPNFQ--YNTFEDLDNFFPE-----------YFMNLGNLLEELPAFNNFQNYG 471
           +E KG+L    Q  +  FEDLD  F E           Y +++   L++  AF NF+ +G
Sbjct: 172 LEIKGELEDFIQVIFTLFEDLDFTFLEMNPFTLVDGKPYPLDMRGELDDTAAFKNFKKWG 231

Query: 472 GLPFP 486
            + FP
Sbjct: 232 DIEFP 236


>At1g49360.1 68414.m05533 F-box family protein contains Pfam
           PF00646: F-box domain
          Length = 481

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +1

Query: 379 EDLDNFFPEYFMNLGNLL 432
           ED  N FP YF  LGN+L
Sbjct: 278 EDFPNLFPSYFRRLGNIL 295


>At5g44270.1 68418.m05418 hypothetical protein
          Length = 309

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
 Frame = +1

Query: 352 PPNFQYNTFEDLDNF---FPEYFMNLGNLLEELPA-FNNFQNY 468
           PP FQ N  +    F   +P+YF+N  ++L++L A +  FQ +
Sbjct: 166 PPEFQVNHTDQTTRFKRSYPKYFLNQISVLDKLKASYRIFQEF 208


>At1g20575.1 68414.m02567 dolichyl-phosphate
           beta-D-mannosyltransferase, putative /
           dolichol-phosphate mannosyltransferase, putative /
           mannose-P-dolichol synthase, putative similar to DPM1
           from Homo sapiens [SP|O60762]; member of
           glycosyltransferase family 2
          Length = 246

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 8/87 (9%)
 Frame = +2

Query: 248 HPE*VPSHIKTHLEIGTAVHIG*KTVK------WS-KQKATCRQTFNITRSKIWTISSPN 406
           HP+ +PS IK  LE   ++  G + VK      W+  +K T R    + ++ +W   S +
Sbjct: 110 HPKYLPSFIKKQLETNASIVTGTRYVKGGGVHGWNLMRKLTSRGANVLAQTLLWPGVS-D 168

Query: 407 IL*T*ATY*KSCQRSTISR-ITEGYLF 484
           +  +   Y KS     IS  +++GY+F
Sbjct: 169 LTGSFRLYKKSALEDVISSCVSKGYVF 195


>At4g17220.1 68417.m02590 expressed protein
          Length = 513

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 13/44 (29%), Positives = 26/44 (59%)
 Frame = +3

Query: 309 SVERR*SGRNKRRLAAKLSI*HVRRSGQFLPRIFYELRQPIRRV 440
           S++ +   + K  LAAK  +  +R + +   R+F ELR+ +R++
Sbjct: 14  SLQSQLKEKEKELLAAKAEVEALRTNEELKDRVFKELRENVRKL 57


>At2g25660.1 68415.m03075 expressed protein 
          Length = 2146

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 31/104 (29%), Positives = 45/104 (43%), Gaps = 7/104 (6%)
 Frame = +1

Query: 139  SLCSEF*IRNC-AGKMRGFIILSVLYLQSTWSF----AVPQSSGVGAFAYQDSSGNRYGG 303
            SL  E  ++N  AG +  F  +   YL + ++F     V    G+ A           G 
Sbjct: 842  SLAYEAMLKNKEAGAVAAFDRVPFSYLSANFTFNTDNCVADLYGIRATLVDGGEIRGAGN 901

Query: 304  TYRLKDGEVVETKGDLPPNFQYNTFED--LDNFFPEYFMNLGNL 429
             +   +GEV +T  D+  NF  N   D  L  + PEYF N+G L
Sbjct: 902  AWICPEGEVDDTALDV--NFSGNISFDKVLHRYMPEYF-NIGML 942


>At2g20650.2 68415.m02422 zinc finger (C3HC4-type RING finger)
           family protein
          Length = 559

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 461 WKLLNAGNSSNRLPKFIKYSGKKL 390
           WK L+  NSS++ P F K SG  +
Sbjct: 70  WKFLDTVNSSSKFPDFRKESGNSV 93


>At2g20650.1 68415.m02421 zinc finger (C3HC4-type RING finger)
           family protein
          Length = 559

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 461 WKLLNAGNSSNRLPKFIKYSGKKL 390
           WK L+  NSS++ P F K SG  +
Sbjct: 70  WKFLDTVNSSSKFPDFRKESGNSV 93


>At5g04870.1 68418.m00510 calcium-dependent protein kinase isoform
           AK1 (AK1) identical to calcium-dependent protein kinase,
           isoform AK1 (CDPK) [Arabidopsis thaliana]
           SWISS-PROT:Q06850; contains protein kinase domain,
           Pfam:PF00069; contains EF hand domain (calcium-binding
           EF-hand), Pfam:PF00036, INTERPRO:IPR002048
          Length = 610

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +1

Query: 25  QTDEYTRARILIISILHR*KVLVTINKFDKLGTNLISESLCSE 153
           Q D     + L  ++L R K    +NKF K+   +I+ESL  E
Sbjct: 409 QVDGVAPDKPLDSAVLSRMKQFSAMNKFKKMALRVIAESLSEE 451


>At4g01590.1 68417.m00207 expressed protein 
          Length = 200

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +1

Query: 319 DGEVVETKGDLPPNFQYNTFEDLDNFFPEYFMNLGNLLEEL 441
           D EVVE++G+   N  Y+  +D D+   +Y      L+EE+
Sbjct: 159 DEEVVESEGEESDNGDYDQNQDFDDDDDDYNNEDDGLVEEV 199


>At2g04300.1 68415.m00422 leucine-rich repeat protein kinase,
           putative similar to light repressible receptor protein
           kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
           contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 851

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 141 IVFGVLNTQLRGQNEGFYHIKCFISP 218
           I FG+L+    G  EGF  + C +SP
Sbjct: 16  ITFGLLHVVEAGNQEGFISLDCGLSP 41


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,490,682
Number of Sequences: 28952
Number of extensions: 274848
Number of successful extensions: 749
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 749
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1053014392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)