Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_G10
         (375 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyc...    26   2.2  
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce...    25   3.9  
SPAC27E2.04c |mug155||sequence orphan|Schizosaccharomyces pombe|...    24   6.8  
SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory sub...    24   9.0  
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    24   9.0  

>SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 721

 Score = 25.8 bits (54), Expect = 2.2
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -3

Query: 307 RGFYILNMLSELINMTSLYDQFINMSESKYVRSSFFITI 191
           RGF   N   + I    +     N+ E+KYVRS  ++TI
Sbjct: 51  RGFASFNKPPQTITEKIVQKFAQNIPENKYVRSGDYVTI 89


>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1347

 Score = 25.0 bits (52), Expect = 3.9
 Identities = 14/70 (20%), Positives = 31/70 (44%)
 Frame = -3

Query: 301  FYILNMLSELINMTSLYDQFINMSESKYVRSSFFITISDMSISLMVLDIVDKSFLYTCTS 122
            F IL++  EL+ +          S  +++      T+ D+S+S    ++  +   Y C +
Sbjct: 845  FEILSIADELLFLE--LKSIAQQSLLRFLNLKTLPTLMDLSLSYHAEELYSRCIDYACHN 902

Query: 121  VNFMLFVKKV 92
            + F L   ++
Sbjct: 903  IEFFLEANRI 912


>SPAC27E2.04c |mug155||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 187

 Score = 24.2 bits (50), Expect = 6.8
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +2

Query: 290 ENVETSFYLYLNNQINKQHFLKVKNKK 370
           E +  S  ++LN QINK  F  +++K+
Sbjct: 28  EKLPLSIEIFLNKQINKISFDTIRSKQ 54


>SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory
           subunit Ekc1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 838

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = -3

Query: 232 SESKYVRSSFFITISD 185
           +E+KY RS+FFI  SD
Sbjct: 786 NENKYPRSNFFINGSD 801


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
            subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 9/11 (81%), Positives = 10/11 (90%)
 Frame = +3

Query: 219  YLDSDMLMNWS 251
            YLD DMLMN+S
Sbjct: 1450 YLDQDMLMNYS 1460


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,371,976
Number of Sequences: 5004
Number of extensions: 25020
Number of successful extensions: 59
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 120195862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)