Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_G10
         (375 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0648 - 19694538-19696569,19697151-19697998                       26   8.4  
03_02_0583 + 9635002-9637299                                           26   8.4  
01_01_0569 - 4214513-4214669,4215082-4216031,4216488-4216547           26   8.4  

>08_02_0648 - 19694538-19696569,19697151-19697998
          Length = 959

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 11/39 (28%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -3

Query: 295 ILNMLSELINMTSL-YDQFINMSESKYVRSSFFITISDM 182
           ++  + E +N  SL Y + +NM+       S+F+ I D+
Sbjct: 253 LMQRIKEYLNRKSLEYHELVNMTREFLENKSYFVLIDDV 291


>03_02_0583 + 9635002-9637299
          Length = 765

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +2

Query: 11  GEIRLSVECMFRHNAPRIPLR*GNLYAYFLHKQHEVYRRAS 133
           G   ++V  MF  +A  +P+     Y Y     H  YRR+S
Sbjct: 511 GFFAIAVSTMFYTSADALPVFLVERYIYLRETAHNAYRRSS 551


>01_01_0569 - 4214513-4214669,4215082-4216031,4216488-4216547
          Length = 388

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = -2

Query: 137 VYLHVGKLHVVCEESRHINFPIEGES*GHCVETYTPPTSVSRLH 6
           +Y++ G+        R    PIE E+  +     +PP+S S LH
Sbjct: 333 IYIYRGEKAFCSANCRDQQIPIEEEAENNTTIVSSPPSSCSSLH 376


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,239,425
Number of Sequences: 37544
Number of extensions: 141840
Number of successful extensions: 243
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 243
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 600754600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)