Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_G10
         (375 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75545-6|CAA99888.3|  649|Caenorhabditis elegans Hypothetical pr...    30   0.62 
AL008986-2|CAA15621.3|  649|Caenorhabditis elegans Hypothetical ...    30   0.62 
AF016682-9|AAB66189.3|  441|Caenorhabditis elegans Hypothetical ...    28   2.5  
Z78418-2|CAB01695.1|  817|Caenorhabditis elegans Hypothetical pr...    27   5.8  

>Z75545-6|CAA99888.3|  649|Caenorhabditis elegans Hypothetical
           protein H37N21.1 protein.
          Length = 649

 Score = 29.9 bits (64), Expect = 0.62
 Identities = 12/34 (35%), Positives = 23/34 (67%)
 Frame = +2

Query: 242 ELVVQRRHVDEL**HVENVETSFYLYLNNQINKQ 343
           ++ ++ RH+ E+  H+EN E S  L L +Q+++Q
Sbjct: 515 DMRLENRHILEINVHIENEEMSIVLLLEDQMHRQ 548


>AL008986-2|CAA15621.3|  649|Caenorhabditis elegans Hypothetical
           protein H37N21.1 protein.
          Length = 649

 Score = 29.9 bits (64), Expect = 0.62
 Identities = 12/34 (35%), Positives = 23/34 (67%)
 Frame = +2

Query: 242 ELVVQRRHVDEL**HVENVETSFYLYLNNQINKQ 343
           ++ ++ RH+ E+  H+EN E S  L L +Q+++Q
Sbjct: 515 DMRLENRHILEINVHIENEEMSIVLLLEDQMHRQ 548


>AF016682-9|AAB66189.3|  441|Caenorhabditis elegans Hypothetical
           protein T07D3.9a protein.
          Length = 441

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 23/80 (28%), Positives = 36/80 (45%)
 Frame = -3

Query: 253 YDQFINMSESKYVRSSFFITISDMSISLMVLDIVDKSFLYTCTSVNFMLFVKKVGI*ISL 74
           +D F+  ++ KYV+     TISD    L  L  ++   L     VN  +F   +    S+
Sbjct: 351 FDSFVTYTDGKYVQVKVAATISDQH-KLPELAKLNHPTLGEEARVNTNVFNFTME---SV 406

Query: 73  SKGNPRGIVSKHTLHRQAYL 14
              N   +V KH +H  +YL
Sbjct: 407 ENPNVLRVVPKHYVHTTSYL 426


>Z78418-2|CAB01695.1|  817|Caenorhabditis elegans Hypothetical
           protein F25D7.3 protein.
          Length = 817

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = +2

Query: 47  HNAPRIPLR*GNLYAYFLHKQHEVYRRASIQKGLID 154
           +N P IP+R GN YA  L    E + R S+Q  L+D
Sbjct: 350 NNFPGIPVRLGNFYASPLVDFKE-FMRKSLQLKLVD 384


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,482,060
Number of Sequences: 27780
Number of extensions: 137086
Number of successful extensions: 338
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 338
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 338
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 546325158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)