Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_G10
         (375 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g14520.1 68414.m01721 oxygenase-related similar to myo-inosit...    28   2.3  
At5g56640.1 68418.m07071 expressed protein similar to myo-inosit...    27   5.4  
At5g39930.1 68418.m04842 expressed protein ; expression supporte...    27   5.4  
At4g26260.1 68417.m03779 expressed protein similar to myo-inosit...    27   5.4  

>At1g14520.1 68414.m01721 oxygenase-related similar to myo-inositol
           oxygenase [Sus scrofa] gi|17432544|gb|AAL39076
          Length = 311

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +3

Query: 27  RWSVCFDTMPLGFPFDREIYMPTFFTNN 110
           +W+V  DT P+G  FD  I    +F  N
Sbjct: 163 QWAVVGDTFPVGCAFDESIVHHKYFKEN 190


>At5g56640.1 68418.m07071 expressed protein similar to myo-inositol
           oxygenase [Sus scrofa] gi|17432544|gb|AAL39076
          Length = 314

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +3

Query: 27  RWSVCFDTMPLGFPFDREIYMPTFFTNNMKFTD 125
           +W+V  DT P+G  FD       +F  N  F +
Sbjct: 166 QWAVVGDTFPVGCAFDESNVHHKYFMENPDFNN 198


>At5g39930.1 68418.m04842 expressed protein ; expression supported
           by MPSS
          Length = 423

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +3

Query: 93  TFFTNNMKFTDVQVYR 140
           T +T  +KF+DVQVYR
Sbjct: 315 TVYTKTVKFSDVQVYR 330


>At4g26260.1 68417.m03779 expressed protein similar to myo-inositol
           oxygenase [Sus scrofa] gi|17432544|gb|AAL39076
          Length = 317

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +3

Query: 27  RWSVCFDTMPLGFPFDREIYMPTFFTNNMKF 119
           +W+V  DT P+G  FD       +F  N  F
Sbjct: 169 QWAVVGDTFPVGCAFDESNVHHKYFVENPDF 199


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,892,380
Number of Sequences: 28952
Number of extensions: 122008
Number of successful extensions: 218
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 218
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 507810264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)