Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_G09
         (634 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces pom...    44   1e-05
SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces p...    39   5e-04
SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces pomb...    36   0.004
SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces p...    34   0.020
SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces p...    28   0.97 
SPBC800.06 |brx1||ribosome biogenesis protein Brx1|Schizosacchar...    27   3.0  
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr...    26   5.2  
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ...    25   6.9  
SPAC6B12.12 |tom70||mitochondrial TOM complex subunit Tom70|Schi...    25   9.1  

>SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 202

 Score = 44.4 bits (100), Expect = 1e-05
 Identities = 27/44 (61%), Positives = 31/44 (70%), Gaps = 9/44 (20%)
 Frame = +2

Query: 2   ECSAKSKEGVREVFETATRAAL-----QVK----KKKKTRCSLL 106
           ECSAK+ EGVREVFE+ATRAA+     +VK     KKK RC LL
Sbjct: 159 ECSAKTNEGVREVFESATRAAMLKHKPKVKPSSGTKKKKRCILL 202


>SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 200

 Score = 39.1 bits (87), Expect = 5e-04
 Identities = 23/42 (54%), Positives = 25/42 (59%), Gaps = 7/42 (16%)
 Frame = +2

Query: 2   ECSAKSKEGVREVFETATRAAL-------QVKKKKKTRCSLL 106
           ECSAK  EGV EVFETA RA++         K KKK  C LL
Sbjct: 159 ECSAKLNEGVNEVFETAARASMLKFKPASVPKTKKKKHCILL 200


>SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 200

 Score = 36.3 bits (80), Expect = 0.004
 Identities = 18/39 (46%), Positives = 26/39 (66%), Gaps = 4/39 (10%)
 Frame = +2

Query: 2   ECSAKSKEGVREVFETATRAALQVK----KKKKTRCSLL 106
           ECS+ + +GV +VFE ATRAAL V+     K  T+C ++
Sbjct: 161 ECSSLTGDGVDDVFEAATRAALTVRDSENDKSSTKCCII 199


>SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 192

 Score = 33.9 bits (74), Expect = 0.020
 Identities = 17/37 (45%), Positives = 26/37 (70%), Gaps = 2/37 (5%)
 Frame = +2

Query: 2   ECSAKSKEGVREVFETATRAALQ--VKKKKKTRCSLL 106
           ECSA +++G++ VF+ A  AAL   V  KKK++C +L
Sbjct: 156 ECSALTQKGLKNVFDEAIVAALDPPVPHKKKSKCLVL 192


>SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 203

 Score = 28.3 bits (60), Expect = 0.97
 Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
 Frame = +2

Query: 2   ECSAKSKEGVREVFETATRAALQVKKK---KKTRCSLL 106
           ECSAK   GV EVF+ A    L +KK     K  C +L
Sbjct: 168 ECSAKENTGVNEVFQLA--VGLTIKKSFSFSKKSCVIL 203


>SPBC800.06 |brx1||ribosome biogenesis protein
           Brx1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 295

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -3

Query: 512 KQVSVRLHDRGINYNEDEMLNSLYNIL*HEK 420
           KQ  + L  RG+ Y +  +LN L +++ H K
Sbjct: 42  KQKVLVLSSRGVTYRQRHLLNDLVSMMPHSK 72


>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 208

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 2   ECSAKSKEGVREVFETATRAALQ 70
           E SAK    V ++FET +R AL+
Sbjct: 156 EASAKENTNVTDLFETVSRLALE 178


>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 736

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -2

Query: 162 SGCMRTIHKSEFSRHRHTYSR 100
           SG +RT+HK + +R+R  Y R
Sbjct: 3   SGPIRTLHKGKAARNRTPYDR 23


>SPAC6B12.12 |tom70||mitochondrial TOM complex subunit
           Tom70|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 625

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = +2

Query: 14  KSKEGVREVFETATRAALQVKKKKKTR 94
           KS E  ++V ETA  AA   KKKKK +
Sbjct: 92  KSSETGKDV-ETAAAAAAAAKKKKKNK 117


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,444,741
Number of Sequences: 5004
Number of extensions: 47323
Number of successful extensions: 95
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)