Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_G09
         (634 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1357 + 35899480-35899578,35900247-35900334,35900438-359005...    33   0.19 
02_01_0155 - 1080923-1081024,1081111-1081176,1081306-1081370,108...    31   0.58 
05_06_0061 + 25274693-25274794,25274982-25275069,25275186-252752...    31   1.0  
01_01_0909 - 7163886-7163931,7164148-7164254,7164370-7164435,716...    30   1.8  
12_02_1072 + 25834719-25834908,25837822-25838099,25839265-25839798     29   3.1  
02_05_0336 + 28033315-28033365,28033580-28033585,28033798-280338...    28   7.1  
07_03_0598 + 19858004-19858192,19858295-19858926,19859001-198590...    27   9.4  
01_06_1377 + 36764461-36765339                                         27   9.4  

>02_05_1357 +
           35899480-35899578,35900247-35900334,35900438-35900592,
           35900652-35900715,35902910-35902974,35903061-35903126,
           35903644-35903745
          Length = 212

 Score = 33.1 bits (72), Expect = 0.19
 Identities = 12/31 (38%), Positives = 22/31 (70%)
 Frame = +2

Query: 2   ECSAKSKEGVREVFETATRAALQVKKKKKTR 94
           ECS+K+++ ++ VF+ A +  LQ  K+KK +
Sbjct: 172 ECSSKTQQNIKAVFDAAIKVVLQPPKQKKKK 202


>02_01_0155 -
           1080923-1081024,1081111-1081176,1081306-1081370,
           1081938-1082001,1082359-1082507,1082591-1082678,
           1083757-1083855
          Length = 210

 Score = 31.5 bits (68), Expect = 0.58
 Identities = 18/41 (43%), Positives = 26/41 (63%), Gaps = 6/41 (14%)
 Frame = +2

Query: 2   ECSAKSKEGVREVFETATRAALQ---VKKKKKTR---CSLL 106
           ECS+K++  V+ VF+ A +  LQ    KKKKK +   CS+L
Sbjct: 170 ECSSKTQLNVKGVFDAAIKVVLQPPKAKKKKKAQRGACSIL 210


>05_06_0061 +
           25274693-25274794,25274982-25275069,25275186-25275295,
           25275542-25275605,25275713-25275777,25275864-25275929,
           25276084-25276199,25276382-25276415
          Length = 214

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 10/28 (35%), Positives = 21/28 (75%)
 Frame = +2

Query: 2   ECSAKSKEGVREVFETATRAALQVKKKK 85
           ECS+K+++ ++ VF+TA +  LQ  +++
Sbjct: 158 ECSSKTQQNIKAVFDTAIKVVLQPPRRR 185


>01_01_0909 -
           7163886-7163931,7164148-7164254,7164370-7164435,
           7164720-7164784,7164937-7165000,7165685-7165794,
           7165972-7166059,7166100-7166297
          Length = 247

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = +2

Query: 2   ECSAKSKEGVREVFETATRAALQVKKKK 85
           ECS+K++  ++ VF+TA +  LQ  + K
Sbjct: 190 ECSSKTQRNIKAVFDTAIKVVLQPPRHK 217


>12_02_1072 + 25834719-25834908,25837822-25838099,25839265-25839798
          Length = 333

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 10/21 (47%), Positives = 18/21 (85%)
 Frame = +3

Query: 177 NDSDSTAVTMSATQCFLPILT 239
           N+++S + T++A QC+LPI+T
Sbjct: 246 NNNNSNSATVNAQQCYLPIVT 266


>02_05_0336 +
           28033315-28033365,28033580-28033585,28033798-28033884,
           28034741-28034830,28035736-28037778,28037916-28038062,
           28038148-28038560,28038656-28038755
          Length = 978

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 287 SCGYTFTIGTCIFYRLSIKNKCKCLN 364
           +CG+ FT+  C+   LS K++  C N
Sbjct: 536 ACGFNFTMAICLHRPLSSKDQSVCSN 561


>07_03_0598 +
           19858004-19858192,19858295-19858926,19859001-19859057,
           19859159-19859397,19859903-19860097,19860140-19860226,
           19861086-19861201
          Length = 504

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 253 RGPRCTHTYSVFVWLHFHN 309
           R PRC  T++ F W  FH+
Sbjct: 211 RSPRCAATWTGFTWAAFHD 229


>01_06_1377 + 36764461-36765339
          Length = 292

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -1

Query: 130 VLPTPAHLQQRTPSLLLLFDL 68
           VLP P HL    PSLLL  D+
Sbjct: 68  VLPLPPHLSPHDPSLLLSLDV 88


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,633,273
Number of Sequences: 37544
Number of extensions: 293480
Number of successful extensions: 609
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 609
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)