Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_G09
         (634 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    23   1.9  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    23   2.5  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   7.5  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   7.5  

>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +1

Query: 499 TETCLV*YFVF*FFNKIVMYK 561
           T   L+ YF+F +FN +V ++
Sbjct: 14  TSFILINYFIFLYFNSLVRFR 34


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +3

Query: 372 IVGGDHGLPLSEVHL 416
           I+GG +GL  S+VH+
Sbjct: 264 IIGGSNGLDTSKVHI 278


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 5/55 (9%)
 Frame = +2

Query: 305 TIGTCIFYRLSI-----KNKCKCLNIIYSRG*SWTSPFRGPFEIFHAIICYIMNL 454
           +I +C+F+ + I        C     I +    W    R   E+F AI+C++  L
Sbjct: 374 SIWSCLFFFMLILIGLDSQFCTVEGFITAAVDEWPRLLRKRKELFIAIVCFVSYL 428


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 5/55 (9%)
 Frame = +2

Query: 305 TIGTCIFYRLSI-----KNKCKCLNIIYSRG*SWTSPFRGPFEIFHAIICYIMNL 454
           +I +C+F+ + I        C     I +    W    R   E+F AI+C++  L
Sbjct: 427 SIWSCLFFFMLILIGLDSQFCTVEGFITAAVDEWPRLLRKRKELFIAIVCFVSYL 481


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,142
Number of Sequences: 438
Number of extensions: 3129
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18949215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)