Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_G08
         (489 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g60140.1 68416.m06715 glycosyl hydrolase family 1 protein con...    33   0.078
At3g07050.1 68416.m00837 GTP-binding family protein contains Pfa...    29   2.2  
At2g40460.1 68415.m04993 proton-dependent oligopeptide transport...    28   2.9  
At3g10430.1 68416.m01251 F-box family protein contains F-box dom...    28   3.9  
At2g27570.1 68415.m03340 sulfotransferase family protein similar...    27   5.1  
At5g14950.1 68418.m01754 glycosyl hydrolase family 38 protein si...    27   6.8  
At4g22970.1 68417.m03315 peptidase C50 family protein contains P...    27   6.8  
At4g17120.1 68417.m02578 expressed protein                             27   6.8  
At2g44460.1 68415.m05528 glycosyl hydrolase family 1 protein con...    27   6.8  
At4g09920.1 68417.m01624 F-box family protein contains F-box dom...    27   9.0  

>At3g60140.1 68416.m06715 glycosyl hydrolase family 1 protein
           contains Pfam PF00232 : Glycosyl hydrolase family 1
           domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
           similar to Cyanogenic Beta-Glucosidase
           (GI:1311386)(pdb:1CBG) [Trifolium Repens]; identical
           beta-glucosidase GI:10834547
          Length = 577

 Score = 33.5 bits (73), Expect = 0.078
 Identities = 13/42 (30%), Positives = 26/42 (61%)
 Frame = +2

Query: 125 IRYKRQIENNANLFIDKNGWNKSQDGNRPEWIPIQNGYRIQY 250
           + Y ++  NN  ++I +NG N + DG +P    +++ +RI+Y
Sbjct: 394 LNYIKERYNNMPVYIKENGINDNDDGTKPREEIVKDTFRIEY 435


>At3g07050.1 68416.m00837 GTP-binding family protein contains Pfam
           domain, PF01926: GTPase of unknown function
          Length = 582

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 14/43 (32%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
 Frame = +3

Query: 291 LIKCSSQTKH-RYQVKGKHQLLALV-EHHDKQLRNARRIAFQQ 413
           ++K S ++K  R  +K KH++L  V EHH K+ ++A+++   +
Sbjct: 1   MVKRSKKSKSKRVTLKQKHKVLKKVKEHHKKKAKDAKKLGLHR 43


>At2g40460.1 68415.m04993 proton-dependent oligopeptide transport
           (POT) family protein contains Pfam profile: PF00854 POT
           family
          Length = 583

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = +3

Query: 318 HRYQVKGKHQLLALVEHHDKQLRNARRIAFQQPNTTPCVVAIIKLTK 458
           H Y+  GKHQ+     HH    R   + A +  +  PC V  +++ K
Sbjct: 277 HYYKSNGKHQV-----HHTPVFRFLDKAAIKTSSRVPCTVTKVEVAK 318


>At3g10430.1 68416.m01251 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 370

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -1

Query: 405 MQFSAHFSIVCRDVPPVLGVDVCP*PG 325
           + FS +FS+   D+P    +D+ P PG
Sbjct: 274 VSFSRYFSVTLPDIPLFRSIDILPLPG 300


>At2g27570.1 68415.m03340 sulfotransferase family protein similar to
           steroid sulfotransferase from [Brassica napus]
           GI:3420008, GI:3420006; contains Pfam profile PF00685:
           Sulfotransferase domain
          Length = 273

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -1

Query: 219 IHSGRFPS*DLFHPFLSINKFALFS 145
           +H  + PS D  HP LS N   LFS
Sbjct: 88  VHRSKHPSHDHHHPLLSNNPHVLFS 112


>At5g14950.1 68418.m01754 glycosyl hydrolase family 38 protein similar
            to alpha-mannosidase II SP:P27046 from [Mus musculus]
          Length = 1173

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +2

Query: 125  IRYKRQIENNANLFIDKNGWNKSQDGNRPEWIPIQNGYRIQYPL 256
            +RYK  ++N    + D NG+  S+     + IP+Q  Y   YP+
Sbjct: 883  VRYKTDVDNKKVFYSDLNGFQMSRRETYDK-IPLQGNY---YPM 922


>At4g22970.1 68417.m03315 peptidase C50 family protein contains Pfam
            PF03568: Peptidase family C50
          Length = 1773

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 22/76 (28%), Positives = 33/76 (43%)
 Frame = +3

Query: 234  VTEFNTLWTTIIIL*PSFFLIKCSSQTKHRYQVKGKHQLLALVEHHDKQLRNARRIAFQQ 413
            V++F   +   +I   +  L  CSS    +  +  K Q L L E   K+L+NA+ I    
Sbjct: 911  VSQFGVKFAGFLIPFVNKLLDLCSSSLISQGNLYHKKQCLDLAE---KELQNAKEILIAN 967

Query: 414  PNTTPCVVAIIKLTKT 461
                 CV   +KL  T
Sbjct: 968  QRDFSCVKCKLKLEVT 983


>At4g17120.1 68417.m02578 expressed protein
          Length = 1661

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = -1

Query: 438 LPHTGLYSVVEMQFSAHFSIVCRDV 364
           LP    YSV+E Q S HF   CR V
Sbjct: 909 LPFGAEYSVLEAQASGHFICRCRGV 933


>At2g44460.1 68415.m05528 glycosyl hydrolase family 1 protein
           contains Pfam PF00232 : Glycosyl hydrolase family 1
           domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
           similar to beta-glucosidase 1 (GI:12043529) [Arabidopsis
           thaliana]
          Length = 582

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = +2

Query: 125 IRYKRQIENNANLFIDKNGWNKSQDGNRPEWIPIQNGYRIQYPLDN 262
           + Y +   NN  ++I +NG N   DG +     + + +RI Y  D+
Sbjct: 396 LNYIKDKYNNPIVYIKENGINDYDDGTKSREEILNDTFRISYHEDH 441


>At4g09920.1 68417.m01624 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 316

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -2

Query: 440 RYHTRGCIRLLKCNSPRISQLFVVM 366
           RY  +G ++ L CN P +  LFV++
Sbjct: 162 RYFKQGSLQRLLCNCPVLEDLFVLL 186


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,178,566
Number of Sequences: 28952
Number of extensions: 232712
Number of successful extensions: 559
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 559
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 848837888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)