Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_G07
         (589 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g71400.1 68414.m08246 disease resistance family protein / LRR...    31   0.57 
At4g25940.1 68417.m03731 epsin N-terminal homology (ENTH) domain...    30   1.00 
At2g40770.1 68415.m05030 SNF2 domain-containing protein / helica...    30   1.00 
At5g57200.1 68418.m07145 epsin N-terminal homology (ENTH) domain...    30   1.3  
At5g22540.1 68418.m02630 expressed protein contains Pfam profile...    29   1.7  
At2g45870.1 68415.m05705 expressed protein contains Pfam profile...    29   1.7  
At3g52970.1 68416.m05839 cytochrome P450 family protein cytochro...    28   4.0  
At1g13260.1 68414.m01539 DNA-binding protein RAV1 (RAV1) identic...    28   5.3  
At5g15510.1 68418.m01816 expressed protein                             27   7.0  
At5g08370.1 68418.m00986 alpha-galactosidase, putative / melibia...    27   7.0  
At1g17460.1 68414.m02141 myb family transcription factor contain...    27   9.3  

>At1g71400.1 68414.m08246 disease resistance family protein / LRR
           family protein contains leucine rich-repeat domains
           Pfam:PF00560, INTERPRO:IPR001611; similar to Hcr2-5D
           [Lycopersicon esculentum] gi|3894393|gb|AAC78596
          Length = 847

 Score = 31.1 bits (67), Expect = 0.57
 Identities = 19/79 (24%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
 Frame = +1

Query: 19  YHLHSVKNYEAIRFLDIFEKTFVQSLQKGKFESYGKKIDFHDEKAINFVGNYWQENADLY 198
           YH H+   ++++R +DI    F  +L    F ++ K +    E+   ++  +W+     Y
Sbjct: 581 YHRHASIGFQSLRIIDISHNNFSGTLPPYYFSNW-KDMTTLTEEMDQYMTEFWRYADSYY 639

Query: 199 E--EEVTKDYQRSYEIVAR 249
              E V K    S+E + R
Sbjct: 640 HEMEMVNKGVDMSFERIRR 658


>At4g25940.1 68417.m03731 epsin N-terminal homology (ENTH)
           domain-containing protein contains Pfam PF01417: ENTH
           domain. ENTH (Epsin N-terminal homology) domain; similar
           to  Chain B, Crystal Structure Of N-Terminal Domain Of
           Drosophila Ap180 (GP:13399617) [Drosophila
           melanogaster]; supporting cDNA
           gi|20465326|gb|AY096427.1|
          Length = 601

 Score = 30.3 bits (65), Expect = 1.00
 Identities = 35/132 (26%), Positives = 59/132 (44%), Gaps = 14/132 (10%)
 Frame = +1

Query: 175 WQENADLYEEEVTKDYQ-RSYEIVARHV---LGAAPKPFD---KHTFMPSALDFYQTALR 333
           W     L+ EE  + Y+   Y+I A  +    GA+ K  D     T+    L   +   +
Sbjct: 139 WIRTYALFLEERLECYRVLKYDIEAERLPKGSGASSKNVDFNASQTYRTRMLSDEELLEQ 198

Query: 334 DPAFYQLYXRIVGYI---NAFKHYLKPYPQE---KLHF-VGVXINDVVVEKLVTFFDYSQ 492
            PA  QL  R++G     +A+ +YL  Y      K  F +   IND ++  +  FF+ S+
Sbjct: 199 LPALQQLLYRLIGCQPEGSAYSNYLIQYALALVLKESFKIYCAINDGIINLVDMFFEMSR 258

Query: 493 FDATNSVFLTKK 528
            DA  ++ + K+
Sbjct: 259 HDAVKALNIYKR 270


>At2g40770.1 68415.m05030 SNF2 domain-containing protein / helicase
           domain-containing protein / zinc finger (C3HC4 type RING
           finger) family protein low similarity to SP|P36607 DNA
           repair protein rad8 {Schizosaccharomyces pombe};
           contains Pfam profiles PF00271: Helicase conserved
           C-terminal domain, PF00176: SNF2 family N-terminal
           domain, PF00628: PHD-finger, PF00097: Zinc finger, C3HC4
           type (RING finger)
          Length = 1648

 Score = 30.3 bits (65), Expect = 1.00
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +2

Query: 122 ARKLISTMKRQLTLSETIGKRTPICMKKKLQRIINDLMKLSLAMCSVQ 265
           AR++I T+KR +          P+    +  +++N L+KL  A C  Q
Sbjct: 719 AREVIETLKRDILKRGHTSSDNPLVTHAEAAKLLNSLLKLRQACCHPQ 766


>At5g57200.1 68418.m07145 epsin N-terminal homology (ENTH)
           domain-containing protein / clathrin assembly
           protein-related low similarity to clathrin assembly
           protein AP180 [Xenopus laevis] GI:6492344; contains Pfam
           profile PF01417: ENTH domain
          Length = 591

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 35/127 (27%), Positives = 56/127 (44%), Gaps = 9/127 (7%)
 Frame = +1

Query: 175 WQENADLYEEEVTKDYQ-RSYEIVARHVLGAAPKPFDKH-TFMPSALDFYQTALRDPAFY 348
           W     L+ EE  + Y+   Y+I A  +  A+      H T M S  D  +     PA  
Sbjct: 139 WVRTYALFLEERLECYRVLKYDIEAERLPKASGAASKTHRTRMLSGEDLLEQL---PALQ 195

Query: 349 QLYXRIVGYIN---AFKHYLKPYPQE---KLHF-VGVXINDVVVEKLVTFFDYSQFDATN 507
           QL  R++G      A+ +YL  Y      K  F +   IND ++  +  FF+ S+ DA  
Sbjct: 196 QLLYRLIGCQPEGAAYSNYLIQYALALVLKESFKIYCAINDGIINLVDMFFEMSRHDAVK 255

Query: 508 SVFLTKK 528
           ++ + K+
Sbjct: 256 ALNIYKR 262


>At5g22540.1 68418.m02630 expressed protein contains Pfam profile
           PF03140: Plant protein of unknown function
          Length = 440

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +1

Query: 46  EAIRFLDIFEKTFVQSLQKGKFESYGKKIDFHDEKAINFV 165
           EA   LD+  KTFV    + + + +  K  F+D + + FV
Sbjct: 217 EAKHLLDLIRKTFVPVPSQRRIKDHSSKSSFNDHEYLGFV 256


>At2g45870.1 68415.m05705 expressed protein contains Pfam profile
           PF05249: Uncharacterised protein family (UPF0187)
          Length = 410

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 24/77 (31%), Positives = 40/77 (51%)
 Frame = +2

Query: 101 KANSNRMARKLISTMKRQLTLSETIGKRTPICMKKKLQRIINDLMKLSLAMCSVQHLNHS 280
           K++ + ++ KLIS +K     S+ I +R  +  K+ L    N +   S    S++HL H 
Sbjct: 49  KSDDSPLSEKLISLLKAVPNWSDGIKERR-MQQKRSLYTHENWVRHRS----SLRHLRHV 103

Query: 281 TSTPSCPVRLTFTKPHF 331
           +S+PS  V L+   P F
Sbjct: 104 SSSPSSRVILSLIPPVF 120


>At3g52970.1 68416.m05839 cytochrome P450 family protein cytochrome
           P450 76A2, eggplant, PIR:S38534
          Length = 516

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
 Frame = +1

Query: 124 KKIDFHDEKAINFVGNYWQENADLYE----EEVTKDY 222
           +K  FH EKA    G + +E  ++ E    +E TKDY
Sbjct: 242 RKTQFHVEKAFEIAGEFIRERTEVREREKSDEKTKDY 278


>At1g13260.1 68414.m01539 DNA-binding protein RAV1 (RAV1) identical
           to SP|Q9ZWM9 DNA-binding protein RAV1 {Arabidopsis
           thaliana}, RAV1 GI:3868857 from [Arabidopsis thaliana]
          Length = 344

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 21/75 (28%), Positives = 35/75 (46%)
 Frame = +1

Query: 301 SALDFYQTALRDPAFYQLYXRIVGYINAFKHYLKPYPQEKLHFVGVXINDVVVEKLVTFF 480
           SA   ++ A+      +L   ++   +A KH+  P P   +   GV +N   V   V  F
Sbjct: 183 SAEALFEKAVTPSDVGKLNRLVIPKHHAEKHF--PLPSSNVSVKGVLLNFEDVNGKVWRF 240

Query: 481 DYSQFDATNSVFLTK 525
            YS ++++ S  LTK
Sbjct: 241 RYSYWNSSQSYVLTK 255


>At5g15510.1 68418.m01816 expressed protein
          Length = 497

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
 Frame = +1

Query: 127 KIDFHDEKAINFVGNYWQENA---DLYEEEVTKDYQRSYEIVARHVLGAAPKPFDKHTFM 297
           + D+   + ++F+  Y  E      L EEE  +  ++  E+V +    A P P+    F+
Sbjct: 397 EFDYQVAEKMSFIEQYKMERERQQKLAEEEEIRRLRK--ELVPK----AQPMPYFDRPFI 450

Query: 298 PSALDFYQTALRDPAFY 348
           P     + TA RDP F+
Sbjct: 451 PRRSSKHPTAPRDPKFH 467


>At5g08370.1 68418.m00986 alpha-galactosidase, putative / melibiase,
           putative / alpha-D-galactoside galactohydrolase,
           putative similar to alpha-galactosidase SP:Q42656 from
           [Coffea arabica]
          Length = 396

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
 Frame = -3

Query: 149 FSSWKSIFLPYDSNLPFCRDCTKVFSKMSK---NRIAS*FFTLCRW 21
           F+SW   +L YD+         + + KMSK   N   S FF+LC W
Sbjct: 150 FASWGIDYLKYDNCENTGTSPRERYPKMSKALLNSGRSIFFSLCEW 195


>At1g17460.1 68414.m02141 myb family transcription factor contains
           Pfam PF00249: Myb-like DNA-binding domain
          Length = 604

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +2

Query: 56  GSWTFLKRLSYSPY 97
           G WT +K+LS+SPY
Sbjct: 517 GKWTEIKKLSFSPY 530


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,155,004
Number of Sequences: 28952
Number of extensions: 238321
Number of successful extensions: 645
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 645
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1161268208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)