Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_G06
(524 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC530.10c |anc1||adenine nucleotide carrier Anc1|Schizosacchar... 41 1e-04
SPAC1B3.17 |clr2||chromatin silencing protein Clr2|Schizosacchar... 27 1.3
SPBC14F5.11c |mug186||sorting nexin Snx41|Schizosaccharomyces po... 27 1.3
SPAC18G6.15 |mal3||EB1 family Mal3|Schizosaccharomyces pombe|chr... 27 1.7
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 27 1.7
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ... 26 3.0
SPAC3A12.04c |||RNase P and RNase MRP subunit p30 |Schizosacchar... 26 3.0
SPAC17H9.08 |||mitochondrial coenzyme A transporter|Schizosaccha... 26 4.0
SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosacch... 25 6.9
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 25 9.1
>SPBC530.10c |anc1||adenine nucleotide carrier
Anc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 322
Score = 41.1 bits (92), Expect = 1e-04
Identities = 26/76 (34%), Positives = 38/76 (50%)
Frame = -1
Query: 458 SWAIAQTVTTFAGIISYPFDTVRRRMMIQYVRAKCDNHYEYPIQSWTTIPKIEVGTPLVT 279
S+ + VTT +G+ SYP DT+RRRMM+ A Y + I E
Sbjct: 235 SFLLGWAVTTGSGVASYPLDTIRRRMMMTSGEAV---KYSSSFECGRQILAKEGARSFFK 291
Query: 278 GALSDVVRAAAGAFVM 231
GA ++++R AGA V+
Sbjct: 292 GAGANILRGVAGAGVL 307
>SPAC1B3.17 |clr2||chromatin silencing protein
Clr2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 537
Score = 27.5 bits (58), Expect = 1.3
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = -3
Query: 246 RCVRDGPWTT-DNQESPPKYNAKTLCSPSLISITIPYHLTALPCNHILVNRCNN 88
R VR P ++ D E PKY+++ + S + Y+L +LP N+ L R +N
Sbjct: 99 RHVRPNPKSSKDTLEKQPKYSSQIYLTDSFEN----YYLASLPTNYQLYQRDSN 148
>SPBC14F5.11c |mug186||sorting nexin Snx41|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 586
Score = 27.5 bits (58), Expect = 1.3
Identities = 21/62 (33%), Positives = 31/62 (50%)
Frame = -1
Query: 236 VMVLGRLTIKNLLLNTMLRHCVHHH*SQLQFPITSPHSPVIISSLTDATMTFNNTLLALS 57
VMV LT K L+ + R H ++LQ I VI++ ++AT+ NN + S
Sbjct: 352 VMVEELLTRKKSFLHLLERR--ERHAARLQQAIGEVDGDVILNRESEATLGVNNAQTSRS 409
Query: 56 TI 51
TI
Sbjct: 410 TI 411
>SPAC18G6.15 |mal3||EB1 family Mal3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 308
Score = 27.1 bits (57), Expect = 1.7
Identities = 9/34 (26%), Positives = 22/34 (64%)
Frame = -1
Query: 404 FDTVRRRMMIQYVRAKCDNHYEYPIQSWTTIPKI 303
FD++ + + ++ V +C+N Y+Y I +W + ++
Sbjct: 36 FDSIYQDIPLKKVNFECNNEYQY-INNWKVLQQV 68
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 27.1 bits (57), Expect = 1.7
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -3
Query: 261 GQSCRRCVRDGPWTTDNQESPPKYNAKTLC 172
G+ CR+CVRD + + QE P Y + C
Sbjct: 591 GKECRKCVRDAFY--ELQEHKPSYMRLSAC 618
>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1502
Score = 26.2 bits (55), Expect = 3.0
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 6/61 (9%)
Frame = -1
Query: 332 IQSWT---TIPKIEVGTPLVTG---ALSDVVRAAAGAFVMVLGRLTIKNLLLNTMLRHCV 171
++ WT ++P ++ P +TG A+ DV + +++V IKN L L+H +
Sbjct: 102 LKFWTNLFSLPANKISIPGLTGVQVAVKDVFSKSLQLYLLVCPSEDIKNDFLLDSLKHAL 161
Query: 170 H 168
H
Sbjct: 162 H 162
>SPAC3A12.04c |||RNase P and RNase MRP subunit p30
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 235
Score = 26.2 bits (55), Expect = 3.0
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = -2
Query: 40 YPSQKIKIYSRL 5
YP QKIKIYSR+
Sbjct: 57 YPEQKIKIYSRI 68
>SPAC17H9.08 |||mitochondrial coenzyme A
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 326
Score = 25.8 bits (54), Expect = 4.0
Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 4/26 (15%)
Frame = -1
Query: 428 FAGI----ISYPFDTVRRRMMIQYVR 363
FAG+ +SYPF+ RR+M I +R
Sbjct: 245 FAGVCGQTVSYPFEVCRRKMQIGGIR 270
>SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 25.0 bits (52), Expect = 6.9
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = -3
Query: 162 LISITIPYHLTALPCNHILVNRC 94
+I + P +L+ PC HI N C
Sbjct: 207 VICLDSPENLSCTPCGHIFCNFC 229
>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1610
Score = 24.6 bits (51), Expect = 9.1
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = -1
Query: 266 DVVRAAAGAFVMVLGRLTIKNLLLNTM 186
D++RA G+ +++ TIKN+L T+
Sbjct: 675 DMIRACIGSKEILVPEETIKNILFTTL 701
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,986,989
Number of Sequences: 5004
Number of extensions: 38241
Number of successful extensions: 101
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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