Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_G05
         (483 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0216 + 15804110-15804284,15804341-15804351                       30   1.1  
06_03_0795 - 24683023-24683155,24685853-24686057,24686275-246864...    30   1.1  
12_02_0219 + 15822050-15824896                                         29   1.5  
03_05_0517 - 25118232-25118730,25119002-25119273                       28   4.5  
01_06_0776 + 31912953-31914086,31914195-31915073,31915160-31915198     28   4.5  
01_07_0009 - 40397276-40397534,40397637-40398745,40398834-403989...    27   7.9  

>12_02_0216 + 15804110-15804284,15804341-15804351
          Length = 61

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +2

Query: 110 SGVPSDGNSDHVVIANPDPFFSQPSNGPSGNYEPISTGPAF 232
           SG P+    +H V      FF+  SN  SGNY   + G  F
Sbjct: 12  SGSPAPPYKNHTVAGADGWFFNATSNTTSGNYSDWAAGETF 52


>06_03_0795 -
           24683023-24683155,24685853-24686057,24686275-24686443,
           24686590-24686775,24686916-24687124,24687197-24687362
          Length = 355

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 137 HYCRPMEHHYCPPRELCLRQPW 72
           HYCR +E+ YC  + L  R+ W
Sbjct: 181 HYCRSIENWYCLSKTLAEREAW 202


>12_02_0219 + 15822050-15824896
          Length = 948

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = +3

Query: 3   NSADNSDTIRQ*KLSC-FSSSPYWPWLAQTEFTWWTIVV 116
           ++ D  D +R+ ++ C F+  P WPWLA    ++ T+V+
Sbjct: 266 STLDFGDPLRKHEMHCRFTQGPPWPWLAVAS-SYGTLVI 303


>03_05_0517 - 25118232-25118730,25119002-25119273
          Length = 256

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 12/37 (32%), Positives = 16/37 (43%)
 Frame = +2

Query: 161 DPFFSQPSNGPSGNYEPISTGPAFVDFNHPNYPPQRY 271
           D FF++    P GN     T P  VD   P  P + +
Sbjct: 37  DWFFTRKGESPQGNISKEETAPTGVDVTDPGRPGRAF 73


>01_06_0776 + 31912953-31914086,31914195-31915073,31915160-31915198
          Length = 683

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
 Frame = -2

Query: 299 TSHHGREGCRIAGVD----NWDD*NRRTPVQCLWVH 204
           TS+ GRE  R AG +    + DD  RRTPVQ  + H
Sbjct: 242 TSNSGRELARAAGSNASGSSGDDPGRRTPVQLPYQH 277


>01_07_0009 -
           40397276-40397534,40397637-40398745,40398834-40398932,
           40399043-40399272,40399534-40399585,40399679-40399865,
           40399987-40400193,40400283-40400449,40400804-40401094,
           40401166-40401636
          Length = 1023

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +3

Query: 21  DTIRQ*KLSC-FSSSPYWPWLAQTEFTWWTIVV 116
           D  R+ ++ C F   P WPWLA T  ++ T+V+
Sbjct: 369 DPSRKHEMHCRFEKKPPWPWLAITS-SFGTLVI 400


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,777,661
Number of Sequences: 37544
Number of extensions: 232918
Number of successful extensions: 586
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 574
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 586
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 987904180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)