Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_G05
         (483 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g44340.1 68416.m04764 sec23/sec24 transport family protein co...    31   0.54 
At5g14540.1 68418.m01704 proline-rich family protein contains pr...    28   2.9  
At4g26750.1 68417.m03854 hydroxyproline-rich glycoprotein family...    28   3.8  
At2g30490.1 68415.m03714 trans-cinnamate 4-monooxygenase / cinna...    27   5.0  
At1g73760.1 68414.m08540 zinc finger (C3HC4-type RING finger) fa...    27   5.0  
At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibit...    27   6.6  

>At3g44340.1 68416.m04764 sec23/sec24 transport family protein
           contains Pfam domains PF04811: Sec23/Sec24 trunk domain,
           PF04815: Sec23/Sec24 helical domain and PF04810:
           Sec23/Sec24 zinc finger
          Length = 1096

 Score = 30.7 bits (66), Expect = 0.54
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = +2

Query: 146 VIANPDPFFSQPSNGPSGNYEPISTGPAFVDFNHPNYPPQRYDNPLARGG 295
           ++A P P+   P+ GP     P+S+ PA       N+P   Y  P   GG
Sbjct: 245 MMAPPPPYGQPPNAGPFTGNSPLSSPPAHSIPPPTNFPGVPYGRPPMPGG 294


>At5g14540.1 68418.m01704 proline-rich family protein contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 547

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
 Frame = +2

Query: 158 PDPFFSQPSNGPSG--NYEPISTGPAFVDFNHPNYPPQRYDNPLAR 289
           P P  S P N P    ++ P  + P+   +N P  PP  YD P  R
Sbjct: 357 PYPQQSYPPNPPRQPPSHPPPGSAPSQQYYNAPPTPPSMYDGPGGR 402


>At4g26750.1 68417.m03854 hydroxyproline-rich glycoprotein family
           protein
          Length = 421

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +2

Query: 179 PSNGPSGNYEPISTGPAFVDFNHP-NYPPQRYDNP 280
           PS+ PS ++ P  TGP+   + HP ++ P   D P
Sbjct: 236 PSSYPSNDHLPPPTGPSDSPYPHPYSHQPYHQDPP 270


>At2g30490.1 68415.m03714 trans-cinnamate 4-monooxygenase / cinnamic
           acid 4-hydroxylase (C4H) (CA4H) / cytochrome P450 73
           (CYP73) (CYP73A5) identical to SP|P92994|
           Trans-cinnamate 4-monooxygenase (EC 1.14.13.11)
           (Cinnamic acid 4-hydroxylase) (CA4H) (C4H) (P450C4H)
           (Cytochrome P450 73). {Arabidopsis thaliana}; molecular
           marker C4H (GB:U71080)
          Length = 505

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 11/39 (28%), Positives = 18/39 (46%)
 Frame = +1

Query: 214 KHWTGVRRFQSSQLSTPAIRQPSRPWWEVNVSIKISDFK 330
           +HW  +RR  +    T  + Q +R  WE   +  + D K
Sbjct: 124 EHWRKMRRIMTVPFFTNKVVQQNREGWEFEAASVVEDVK 162


>At1g73760.1 68414.m08540 zinc finger (C3HC4-type RING finger)
           family protein similar to Pfam domain, PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 367

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +1

Query: 244 SSQLSTPAIRQPSRPWWEVNVSIKISDFKTRRNDD*SYN 360
           S Q+S PA+ + S  W   N  IK +  K +     SYN
Sbjct: 82  SQQVSVPAVIRSSADWDASNFKIKKTKKKNKNKGSSSYN 120


>At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibitor
           family protein low similarity to extensin [Volvox
           carteri] GI:21992
          Length = 312

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = +2

Query: 155 NPDPFFSQPSNGPSGNYEPISTGPAFVDFNHPNYPPQRYDNPLARGGK*MSP 310
           +P P  S PS+ P  +  P S  P  +  + P  PP    +PL+     +SP
Sbjct: 37  SPSPPSSSPSSAPPSSLSPSSPPPLSLSPSSPP-PPPPSSSPLSSLSPSLSP 87


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,532,805
Number of Sequences: 28952
Number of extensions: 184387
Number of successful extensions: 478
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 477
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 829097472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)