Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_G04
         (603 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59042| Best HMM Match : No HMM Matches (HMM E-Value=.)              99   1e-21
SB_52162| Best HMM Match : No HMM Matches (HMM E-Value=.)              55   4e-08
SB_30461| Best HMM Match : zf-C2H2 (HMM E-Value=0.064)                 32   0.31 
SB_42516| Best HMM Match : EF1_GNE (HMM E-Value=3.3e-05)               32   0.31 
SB_58477| Best HMM Match : Ion_trans (HMM E-Value=1.2e-25)             28   6.7  

>SB_59042| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 225

 Score =   99 bits (238), Expect = 1e-21
 Identities = 45/66 (68%), Positives = 54/66 (81%)
 Frame = +3

Query: 405 LRHYADKKSKKPALIAKSSXILDVXPWDDETDMKEMENQVRTIEMDGLLWGASKLVPVGY 584
           L+ Y +KK+KK  +IAKS+ +LDV PWDDETDM EME  VR+I+ DGLLWGASKLVP+ Y
Sbjct: 123 LKAYEEKKAKKKPVIAKSNIMLDVKPWDDETDMAEMEKLVRSIQADGLLWGASKLVPLAY 182

Query: 585 GINKLQ 602
           GI KLQ
Sbjct: 183 GIKKLQ 188



 Score = 86.6 bits (205), Expect = 1e-17
 Identities = 37/62 (59%), Positives = 44/62 (70%)
 Frame = +2

Query: 47  MALGDVKTAQGLNELNQYLAERSYVSGYTPSQADIKVFEQVGKVPAASLPHVLRWYSHIA 226
           M  GD+K+  GL+ LN +L ERSY+ GY PSQAD  VFE +   P ASLPH LRWY+HI 
Sbjct: 1   MGFGDLKSQAGLSALNTFLTERSYIEGYVPSQADAVVFEALKSAPPASLPHALRWYNHIV 60

Query: 227 SY 232
           SY
Sbjct: 61  SY 62


>SB_52162| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 81

 Score = 55.2 bits (127), Expect = 4e-08
 Identities = 23/35 (65%), Positives = 25/35 (71%)
 Frame = +2

Query: 128 YTPSQADIKVFEQVGKVPAASLPHVLRWYSHIASY 232
           Y PSQAD  VFE +   P ASLPH LRWY+HI SY
Sbjct: 2   YVPSQADAVVFEALKSAPPASLPHALRWYNHIVSY 36


>SB_30461| Best HMM Match : zf-C2H2 (HMM E-Value=0.064)
          Length = 197

 Score = 32.3 bits (70), Expect = 0.31
 Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
 Frame = +3

Query: 279 QLELNPRPLLHXXXXXXXXXSIFLALVMRKR--MQKQPESVKKVLRHYADKKSKKPALIA 452
           QLEL  +  L          ++  A+  R    +++ P+SVK +L+  AD   KKP  + 
Sbjct: 33  QLELEKQERLEREEEERFNKTLKKAVFERDESFVEEPPKSVK-ILKPAADVTPKKPKKVK 91

Query: 453 KSSXILDVXPWDDETDMKE 509
               I D  P D+E + KE
Sbjct: 92  HKPVIADPVPVDEEEEPKE 110


>SB_42516| Best HMM Match : EF1_GNE (HMM E-Value=3.3e-05)
          Length = 416

 Score = 32.3 bits (70), Expect = 0.31
 Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 6/87 (6%)
 Frame = +3

Query: 360 MRKRMQKQPE-SVKKVLRHYADKKSKKPALIAKSS---XILDVXPWDDETDMKEMEN--Q 521
           M  R+Q+    ++K+ ++ +A K  +KPA   K       +D+   DDE + +E     +
Sbjct: 44  MAMRVQRSALLTLKRRIKAFAKKPEEKPAAAKKEDDDDSDIDLFGSDDEEEAEEARQLRE 103

Query: 522 VRTIEMDGLLWGASKLVPVGYGINKLQ 602
            R  E +      +KLV + YG+ KLQ
Sbjct: 104 KRLAEYNAKK-ATTKLVEIAYGLKKLQ 129


>SB_58477| Best HMM Match : Ion_trans (HMM E-Value=1.2e-25)
          Length = 578

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = -2

Query: 248 CVQQGCTMRCGCTTSKHEVGWQQVLCR 168
           C  + C   CGCT+ +    W +  CR
Sbjct: 552 CFPECCMNACGCTSGQQHFCWLKFRCR 578


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,005,204
Number of Sequences: 59808
Number of extensions: 263983
Number of successful extensions: 713
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 713
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1463691625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)