Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_G03
         (595 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC777.15 |||tRNA dihydrouridine synthase Dus4 |Schizosaccharom...    31   0.17 
SPAC19B12.02c |||1,3-beta-glucanosyltransferase|Schizosaccharomy...    28   0.89 
SPAC1687.12c |coq4||ubiquinone biosynthesis protein Coq4|Schizos...    28   1.2  
SPCC1620.08 |||succinate-CoA ligase |Schizosaccharomyces pombe|c...    27   1.6  
SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces pom...    27   2.1  
SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyc...    26   3.6  
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    25   6.3  
SPAC1783.07c |pap1|caf3, caf3|transcription factor Caf3|Schizosa...    25   6.3  
SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual    25   6.3  
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac...    25   6.3  
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces...    25   8.3  
SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase |Schizosacch...    25   8.3  

>SPCC777.15 |||tRNA dihydrouridine synthase Dus4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 326

 Score = 30.7 bits (66), Expect = 0.17
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +1

Query: 310 YYLHDYSLNAHYYYHHLT 363
           +Y   YSLN H +YHHLT
Sbjct: 258 WYSTSYSLNFHLFYHHLT 275


>SPAC19B12.02c |||1,3-beta-glucanosyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 542

 Score = 28.3 bits (60), Expect = 0.89
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1

Query: 238 ICKWKDSTRSCVIRELQSFGQYAKFHRY 155
           +C+  DSTRSCVI +  S   Y+    Y
Sbjct: 366 VCECMDSTRSCVINDDVSSDDYSDLFSY 393


>SPAC1687.12c |coq4||ubiquinone biosynthesis protein
           Coq4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 272

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 13/34 (38%), Positives = 23/34 (67%)
 Frame = +1

Query: 373 WLGGDVVPLLKERRGEWYWFVHKQLVNTLLYGKT 474
           W GGD++ +L +  G+ + F+H+ L+N +L  KT
Sbjct: 74  WRGGDMISVLGDASGQPF-FLHR-LLNKMLVDKT 105


>SPCC1620.08 |||succinate-CoA ligase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 433

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
 Frame = +3

Query: 261 VEYYCLALPLPKRFYVLLLT*LQFKCPLLLSSS----DLQQVARRRCSSSIKR 407
           V Y C    + K +Y  +L   + +CP++++S     D++ VA    S+ IKR
Sbjct: 124 VVYVCERKFIRKEYYFAILMDRENQCPMIVASDQGGVDIETVAAENPSAIIKR 176


>SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 986

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +1

Query: 109 GYAIPPIYEVLPEYFNNGEILHTAQRI 189
           GY +PP+Y++   +  + E+L  +Q I
Sbjct: 666 GYVLPPVYKITQIHSGDTELLQLSQEI 692


>SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 430

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
 Frame = -1

Query: 238 ICKWKDSTRSCVIRELQSFGQYAKFHRY*NI--PVKPHILEE*RNLLSQNDEC 86
           IC W   T+S    E +     AK+HR+ +I   V+ H   E   L S +D+C
Sbjct: 207 ICLWDVQTQSFTSSETKVISPIAKYHRHTDIVNDVQFHPQHE-ALLASVSDDC 258


>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1502

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +3

Query: 465 WKDFLMDLVKIGET*W 512
           WK+ +M+L+K  ET W
Sbjct: 622 WKNIVMELIKASETIW 637


>SPAC1783.07c |pap1|caf3, caf3|transcription factor
           Caf3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 552

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +3

Query: 177 CPKDWSSRITHDRVLSFHL 233
           CPK WS  I H R  SF +
Sbjct: 501 CPKVWSKIINHPRFESFDI 519


>SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 426

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +1

Query: 214 EYYPSTYKWDNSVVIRSNTTVW 279
           + YP+ + W  + +IRSN   W
Sbjct: 205 QQYPAAFLWSLATLIRSNGIFW 226


>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
           E3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 30/125 (24%), Positives = 53/125 (42%), Gaps = 7/125 (5%)
 Frame = +1

Query: 133 EVLPEYFN--NGEILHTAQRIGVHGSRMIEYYPSTYKWDNSVVIRSNTTVWHYHCQSASM 306
           EV+P  FN  N  I    +++    S          ++D S  +  N+      C S+ +
Sbjct: 325 EVIPFSFNPYNDLIFSFKEKLYPLNSSPFNTLSDVPQFDVSEFVDENSFDSSSSC-SSKV 383

Query: 307 SYYLHDYSLNAHYYYHH--LTYNKWLGGDVVPLLKERRGEWYWF---VHKQLVNTLLYGK 471
                + S+N+    H   L+YN+ LG D+   + +R  + Y F    + +LV+ L    
Sbjct: 384 FLTTRNNSINSEDSAHEVLLSYNRVLGSDIQGTILDRVKKGYQFDSQKNSELVSDLYLKD 443

Query: 472 TF*WI 486
            + WI
Sbjct: 444 LWSWI 448


>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 967

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -1

Query: 388 HRLLATCCKSDDDNNSGHLNCNHV 317
           H L+    K+DDD ++ HL  +H+
Sbjct: 800 HALMRYLGKTDDDEDNSHLLVHHI 823


>SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 474

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 292 QSASMSYYLHDYSLNAHYYYHHLTYNKWLG 381
           Q+A + Y  HD +L  H Y H   +N W+G
Sbjct: 336 QAAGIFY--HDLALRPHAYQH---FNTWMG 360


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,660,882
Number of Sequences: 5004
Number of extensions: 58157
Number of successful extensions: 144
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)