Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_G03
         (595 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0112 + 5689439-5689474,5689629-5689778,5690194-5690361,569...    31   0.69 
04_04_1360 + 32889597-32890343                                         30   1.6  
08_01_0559 + 4938373-4938524,4938886-4938964,4939046-4939138,494...    29   3.7  
03_01_0319 - 2499470-2499598,2499681-2499746,2499830-2499937,250...    28   6.5  
02_04_0364 + 22374735-22374749,22374903-22375076,22377858-223779...    28   6.5  

>03_02_0112 +
           5689439-5689474,5689629-5689778,5690194-5690361,
           5691334-5691458,5691914-5692007,5692844-5692942,
           5693730-5693910,5694051-5694166,5694758-5694913,
           5695226-5695354,5695554-5695718
          Length = 472

 Score = 31.1 bits (67), Expect = 0.69
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +1

Query: 1   DYDTFYKTTVYMKDRVNQDLYIYVLSTLHIHRSDLEG 111
           +YD F +TT    + V  D Y  VL +  I+R+D EG
Sbjct: 16  EYDKFIRTTDRKHEAVVNDFYSRVLDSGDIYRADYEG 52


>04_04_1360 + 32889597-32890343
          Length = 248

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = +1

Query: 160 GEILHTAQRIGVHGSRMIEYYPSTYKWDNSVVIRSN--TTVWHYHCQSASM 306
           G  L  A+R G H          ++ WD+S+V+ S+  + V H+H + A++
Sbjct: 22  GRTLAVAERDGTHDPATGRALTGSWLWDSSLVLASHLASCVHHHHLRGATV 72


>08_01_0559 +
           4938373-4938524,4938886-4938964,4939046-4939138,
           4941197-4941271,4942328-4942401,4943229-4943284,
           4943293-4943552,4945456-4945590
          Length = 307

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +1

Query: 322 DYSLNAHYYYHHLTYNKWLGGDVVPLLKERRGEWYWFVHKQLVNTLLYG 468
           +Y  + H  Y+   Y K+ GG+     ++     YW  HKQ   T++YG
Sbjct: 44  EYKKSLHNAYN---YYKFRGGEQTKTREKLLVYMYWPCHKQPKGTIIYG 89


>03_01_0319 -
           2499470-2499598,2499681-2499746,2499830-2499937,
           2500125-2500259,2500763-2500840,2500994-2501044,
           2501805-2501879,2501975-2502037,2503048-2503137,
           2503215-2503406,2503498-2503591,2503776-2504279,
           2504415-2504614,2504712-2504756,2505023-2505082,
           2505476-2505520,2505858-2505941,2506121-2506318,
           2506960-2507667
          Length = 974

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 20/71 (28%), Positives = 34/71 (47%)
 Frame = -1

Query: 586 ISSNWIWYTVMIHVSKIVAFVYDVTH*VSPIFTKSIRKSFHIVTCLQVVCVRTSTIRHVS 407
           +S N   Y V +HV +IV     +   VSP+   S + S  +V+  +  C+ T  +    
Sbjct: 381 VSDNAPLYGVCLHVQEIVQRAPGILGMVSPLNPTSYKPSRFLVSAPRCYCLLTK-VPFFE 439

Query: 406 LLIEELHRLLA 374
           L  E L+ ++A
Sbjct: 440 LHYEMLNSIIA 450


>02_04_0364 +
           22374735-22374749,22374903-22375076,22377858-22377935,
           22379270-22380407,22380507-22380901,22382230-22382416,
           22382872-22382942,22383705-22383755
          Length = 702

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +1

Query: 79  TLHIHRSDLEGYAIPPIYEVLPEYFNNGEILHTAQ 183
           T+ +  SD E  A P     LP+  NN  +L++ Q
Sbjct: 382 TMRVFESDFEAKAAPEFGNTLPKSSNNNSMLNSEQ 416


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,324,569
Number of Sequences: 37544
Number of extensions: 344315
Number of successful extensions: 845
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 845
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)