Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_G03
         (595 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81533-3|CAB04335.1|  327|Caenorhabditis elegans Hypothetical pr...    29   2.5  
Z82057-4|CAB61024.2|  370|Caenorhabditis elegans Hypothetical pr...    28   4.4  
Z81119-10|CAB61032.2|  370|Caenorhabditis elegans Hypothetical p...    28   4.4  
U97006-1|AAC47965.1| 2076|Caenorhabditis elegans Hypothetical pr...    28   4.4  
L39925-1|AAA98782.1|  370|Caenorhabditis elegans cathepsin B-lik...    28   4.4  
L39890-1|AAA98788.1|  370|Caenorhabditis elegans cathepsin B-lik...    28   4.4  
AF016450-7|AAB65986.1|  323|Caenorhabditis elegans Serpentine re...    28   4.4  

>Z81533-3|CAB04335.1|  327|Caenorhabditis elegans Hypothetical
           protein F36G9.5 protein.
          Length = 327

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 17/58 (29%), Positives = 27/58 (46%)
 Frame = +1

Query: 118 IPPIYEVLPEYFNNGEILHTAQRIGVHGSRMIEYYPSTYKWDNSVVIRSNTTVWHYHC 291
           I PI  +   +  NG   H A  I  +GS M+    + + W N+ ++  NT +W   C
Sbjct: 163 IYPILCIAIMFPGNGFCSHVAYPI--YGSIMLRVTDTMFGWTNNYILMFNTFLWVSIC 218


>Z82057-4|CAB61024.2|  370|Caenorhabditis elegans Hypothetical
           protein T10H4.12 protein.
          Length = 370

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 22/76 (28%), Positives = 30/76 (39%), Gaps = 3/76 (3%)
 Frame = +1

Query: 217 YYPSTYKWDNSV-VIRSNTTVWHYHCQSASMSYYLHDYSLNAHYYYHHLTYNKWLGGDVV 393
           Y  S YK   +  V    T ++HY    AS   Y   Y   +  Y  H T  K +GG  V
Sbjct: 229 YGASAYKVTTTKSVTEIQTEIYHYGPVEASYKVYEDFYHYKSGVY--HYTSGKLVGGHAV 286

Query: 394 PLL--KERRGEWYWFV 435
            ++      G  YW +
Sbjct: 287 KIIGWGVENGVDYWLI 302


>Z81119-10|CAB61032.2|  370|Caenorhabditis elegans Hypothetical
           protein T10H4.12 protein.
          Length = 370

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 22/76 (28%), Positives = 30/76 (39%), Gaps = 3/76 (3%)
 Frame = +1

Query: 217 YYPSTYKWDNSV-VIRSNTTVWHYHCQSASMSYYLHDYSLNAHYYYHHLTYNKWLGGDVV 393
           Y  S YK   +  V    T ++HY    AS   Y   Y   +  Y  H T  K +GG  V
Sbjct: 229 YGASAYKVTTTKSVTEIQTEIYHYGPVEASYKVYEDFYHYKSGVY--HYTSGKLVGGHAV 286

Query: 394 PLL--KERRGEWYWFV 435
            ++      G  YW +
Sbjct: 287 KIIGWGVENGVDYWLI 302


>U97006-1|AAC47965.1| 2076|Caenorhabditis elegans Hypothetical
           protein C13F10.4 protein.
          Length = 2076

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = +3

Query: 381 RRCSSSIKRETWRMVLVRTQTT--CKHVTIWKDFLMDLVKIG 500
           RRC S I R+T   +L     T  CKH+ +     +DLV IG
Sbjct: 370 RRCISFILRQTIGSLLGENAQTLACKHLGVLLSQYVDLVSIG 411


>L39925-1|AAA98782.1|  370|Caenorhabditis elegans cathepsin B-like
           cysteine proteinaseprotein.
          Length = 370

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 22/76 (28%), Positives = 30/76 (39%), Gaps = 3/76 (3%)
 Frame = +1

Query: 217 YYPSTYKWDNSV-VIRSNTTVWHYHCQSASMSYYLHDYSLNAHYYYHHLTYNKWLGGDVV 393
           Y  S YK   +  V    T ++HY    AS   Y   Y   +  Y  H T  K +GG  V
Sbjct: 229 YGASAYKVTTTKSVTEIQTEIYHYGPVEASYKVYEDFYHYKSGVY--HYTSGKLVGGHAV 286

Query: 394 PLL--KERRGEWYWFV 435
            ++      G  YW +
Sbjct: 287 KIIGWGVENGVDYWLI 302


>L39890-1|AAA98788.1|  370|Caenorhabditis elegans cathepsin B-like
           cysteine proteinaseprotein.
          Length = 370

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 22/76 (28%), Positives = 30/76 (39%), Gaps = 3/76 (3%)
 Frame = +1

Query: 217 YYPSTYKWDNSV-VIRSNTTVWHYHCQSASMSYYLHDYSLNAHYYYHHLTYNKWLGGDVV 393
           Y  S YK   +  V    T ++HY    AS   Y   Y   +  Y  H T  K +GG  V
Sbjct: 229 YGASAYKVTTTKSVTEIQTEIYHYGPVEASYKVYEDFYHYKSGVY--HYTSGKLVGGHAV 286

Query: 394 PLL--KERRGEWYWFV 435
            ++      G  YW +
Sbjct: 287 KIIGWGVENGVDYWLI 302


>AF016450-7|AAB65986.1|  323|Caenorhabditis elegans Serpentine
           receptor, class t protein70 protein.
          Length = 323

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +3

Query: 255 Y*VEYYCLALPLPKRFYVLLLT 320
           Y V Y+C+ALPL   F+VL+ T
Sbjct: 15  YGVAYFCIALPLFPVFFVLMKT 36


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,518,849
Number of Sequences: 27780
Number of extensions: 321770
Number of successful extensions: 836
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 812
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 836
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1258229602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)