Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_G03
         (595 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g28300.1 68418.m03436 trihelix DNA-binding protein, putative ...    29   3.1  
At3g57420.1 68416.m06393 expressed protein contains Pfam domain ...    28   5.4  
At2g25730.1 68415.m03084 expressed protein                             28   5.4  
At3g19820.2 68416.m02511 cell elongation protein / DWARF1 / DIMI...    27   7.1  
At3g19820.1 68416.m02510 cell elongation protein / DWARF1 / DIMI...    27   7.1  
At4g33290.1 68417.m04736 F-box family protein contains Pfam PF00...    27   9.4  
At3g55400.1 68416.m06153 methionyl-tRNA synthetase / methionine-...    27   9.4  
At3g52320.1 68416.m05750 F-box family protein contains F-box dom...    27   9.4  
At1g74920.1 68414.m08691 betaine-aldehyde dehydrogenase, putativ...    27   9.4  
At1g33680.1 68414.m04166 KH domain-containing protein similar to...    27   9.4  

>At5g28300.1 68418.m03436 trihelix DNA-binding protein, putative
           similar to GT-2 factor [Arabidopsis thaliana GI:416490
          Length = 619

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +1

Query: 319 HDYSLNAHYYYHHLTYNKWLGGDVVPLLKERRGEWYWF 432
           HD S N H ++HH   + W   +V+ LL+ R     WF
Sbjct: 88  HDDSDNHHQHHHH---HPWCSDEVLALLRFRSTVENWF 122


>At3g57420.1 68416.m06393 expressed protein contains Pfam domain
           PF03385: Protein of unknown function, DUF288
          Length = 765

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +1

Query: 4   YDTFYKTTVYMKDRVNQDLYIYVLSTLHIHR 96
           Y   +KT V +  R N DLY+      HI++
Sbjct: 534 YGRIFKTVVILSSRKNSDLYVQEAKLDHIYK 564


>At2g25730.1 68415.m03084 expressed protein 
          Length = 2464

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 15/41 (36%), Positives = 18/41 (43%)
 Frame = -3

Query: 527 CLRRYPLSFTDFHQIH*KVFPYSNVFTSCLCTNQYHSPRLS 405
           C RRY +       I  K  P S    SCL  + YH  R+S
Sbjct: 352 CFRRYLVDLKTERNIEDKSSPMSRAINSCL-RDMYHYARIS 391


>At3g19820.2 68416.m02511 cell elongation protein / DWARF1 /
           DIMINUTO (DIM) identical to GB:S71189 [SP|Q39085] from
           [Arabidopsis thaliana]; contains Pfam FAD binding domain
           PF01565
          Length = 561

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
 Frame = +1

Query: 277 WHY-HCQSASMSYYLHDYSLNAHYYYHHLTYNKWLGGDVVPLLKERRGEWYWF 432
           W Y H Q+A       +Y     YY+ H     W G  ++P      G+ +WF
Sbjct: 312 WFYQHAQTALKKGQFVEYIPTREYYHRHTRCLYWEGKLILPF-----GDQFWF 359


>At3g19820.1 68416.m02510 cell elongation protein / DWARF1 /
           DIMINUTO (DIM) identical to GB:S71189 [SP|Q39085] from
           [Arabidopsis thaliana]; contains Pfam FAD binding domain
           PF01565
          Length = 561

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
 Frame = +1

Query: 277 WHY-HCQSASMSYYLHDYSLNAHYYYHHLTYNKWLGGDVVPLLKERRGEWYWF 432
           W Y H Q+A       +Y     YY+ H     W G  ++P      G+ +WF
Sbjct: 312 WFYQHAQTALKKGQFVEYIPTREYYHRHTRCLYWEGKLILPF-----GDQFWF 359


>At4g33290.1 68417.m04736 F-box family protein contains Pfam
           PF00646: F-box domain; contains TIGRFAM TIGR01640 :
           F-box protein interaction domain
          Length = 430

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -2

Query: 267 IRPNNNTIIPFVSGRIVLD 211
           I PNNN ++PF+ G   +D
Sbjct: 304 IEPNNNIMVPFIYGGFFID 322


>At3g55400.1 68416.m06153 methionyl-tRNA synthetase /
           methionine--tRNA ligase / MetRS (cpMetRS) identical to
           methionyl-tRNA synthetase MEtRS [Arabidopsis thaliana]
           GI:2266985
          Length = 616

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +1

Query: 4   YDTFYKTTVYMKDRVNQDLYIYVLSTLHIHRSDLEG 111
           YD F +TT    + + ++ Y  V +   I+R+D EG
Sbjct: 155 YDKFIRTTDPKHEAIVKEFYARVFANGDIYRADYEG 190


>At3g52320.1 68416.m05750 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 390

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
 Frame = +1

Query: 31  YMKDRVNQDLYIYVLSTLHIHRSDLEGYAIPPIYEVLPEYFNNGEILHTAQRIGVH--GS 204
           Y+ DR NQ  Y+ +L +    R D    ++  I +        G +++ A+ +  +  G 
Sbjct: 79  YLVDRENQSKYL-LLQSSSSSRHDHSDTSVSVIDQHSTIPIMGGYLVNAARGLLCYRTGR 137

Query: 205 RMIEYYPSTYKWDNSVVIRSNTTVWHY 285
           R+    PST +     ++RS T VW++
Sbjct: 138 RVKVCNPSTRQIVELPIMRSKTNVWNW 164


>At1g74920.1 68414.m08691 betaine-aldehyde dehydrogenase, putative
           identical to betaine-aldehyde dehydrogenase, chloroplast
           precursor (BADH) [Arabidopsis thaliana]
           SWISS-PROT:Q9S795; strong similarity to betaine aldehyde
           dehydrogenase [Amaranthus hypochondriacus] GI:2388710
          Length = 501

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = +1

Query: 148 YFNNGEILHTAQRIGVHGSRMIEYYPSTYKWDNSVVI 258
           ++ NG+I     R+ VH S   E+     KW  ++ I
Sbjct: 287 FWTNGQICSATSRLLVHESIASEFIEKLVKWSKNIKI 323


>At1g33680.1 68414.m04166 KH domain-containing protein similar to
           FUSE binding protein 2 GB:AAC50892 GI:1575607 from [Homo
           sapiens]
          Length = 759

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +2

Query: 533 YNFGYMYHNGIPYPVRTNHF 592
           ++  Y YH+G PYP + +HF
Sbjct: 423 HSMPYNYHHGGPYPSQGSHF 442


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,573,782
Number of Sequences: 28952
Number of extensions: 296413
Number of successful extensions: 730
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 730
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1180950720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)