Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_G02
         (477 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0216 + 15804110-15804284,15804341-15804351                       30   1.1  
06_03_0795 - 24683023-24683155,24685853-24686057,24686275-246864...    30   1.1  
03_05_0517 - 25118232-25118730,25119002-25119273                       28   3.4  
03_02_0269 + 7001891-7002212,7003598-7004037                           28   3.4  
11_04_0321 - 16359390-16359539,16359674-16359746,16360448-163608...    27   5.9  
12_02_0219 + 15822050-15824896                                         27   7.8  

>12_02_0216 + 15804110-15804284,15804341-15804351
          Length = 61

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +1

Query: 106 SGVPSDGNSDHVVIANPDPFFSQPSNGPSGNYEPISTGPAF 228
           SG P+    +H V      FF+  SN  SGNY   + G  F
Sbjct: 12  SGSPAPPYKNHTVAGADGWFFNATSNTTSGNYSDWAAGETF 52


>06_03_0795 -
           24683023-24683155,24685853-24686057,24686275-24686443,
           24686590-24686775,24686916-24687124,24687197-24687362
          Length = 355

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 133 HYCRPMEHHYCPPRELCLRQPW 68
           HYCR +E+ YC  + L  R+ W
Sbjct: 181 HYCRSIENWYCLSKTLAEREAW 202


>03_05_0517 - 25118232-25118730,25119002-25119273
          Length = 256

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 12/37 (32%), Positives = 16/37 (43%)
 Frame = +1

Query: 157 DPFFSQPSNGPSGNYEPISTGPAFVDFNHPNYPPKRY 267
           D FF++    P GN     T P  VD   P  P + +
Sbjct: 37  DWFFTRKGESPQGNISKEETAPTGVDVTDPGRPGRAF 73


>03_02_0269 + 7001891-7002212,7003598-7004037
          Length = 253

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -3

Query: 292 SHHGREGCRIAWVDNWDD*NRR 227
           + H R+  R+AW D W D +R+
Sbjct: 62  TEHARQRMRVAWADGWVDGSRK 83


>11_04_0321 -
           16359390-16359539,16359674-16359746,16360448-16360845,
           16360919-16362673,16362751-16362861,16363745-16363962,
           16364088-16364196
          Length = 937

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +1

Query: 250 YPPKRYDNPLARGGK 294
           YPPKRY NP+   G+
Sbjct: 859 YPPKRYSNPVGPAGR 873


>12_02_0219 + 15822050-15824896
          Length = 948

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +2

Query: 8   DNSDTIRQ*KLSC-FSSSPYWPWLPQTEFTWWTIVV 112
           D  D +R+ ++ C F+  P WPWL     ++ T+V+
Sbjct: 269 DFGDPLRKHEMHCRFTQGPPWPWLAVAS-SYGTLVI 303


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,447,128
Number of Sequences: 37544
Number of extensions: 222674
Number of successful extensions: 556
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 556
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 979080328
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)