Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_G02
         (477 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70756-7|CAA94794.2|  199|Caenorhabditis elegans Hypothetical pr...    29   1.7  
Z70756-8|CAA94795.2|  212|Caenorhabditis elegans Hypothetical pr...    28   3.0  
U41557-6|AAA83307.1|  589|Caenorhabditis elegans Collagen sequen...    27   7.0  
AC006674-12|AAO38617.1|  357|Caenorhabditis elegans Hypothetical...    27   7.0  
U39993-1|AAA81086.1|  594|Caenorhabditis elegans Hypothetical pr...    27   9.2  
AF003141-14|AAM48549.1|  362|Caenorhabditis elegans Hypothetical...    27   9.2  
AF003141-13|AAK21490.1|  549|Caenorhabditis elegans Hypothetical...    27   9.2  

>Z70756-7|CAA94794.2|  199|Caenorhabditis elegans Hypothetical
           protein T06E4.8 protein.
          Length = 199

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 15/39 (38%), Positives = 17/39 (43%)
 Frame = +1

Query: 142 VIANPDPFFSQPSNGPSGNYEPISTGPAFVDFNHPNYPP 258
           V A P P F+ P+  P     PI  GPAF     P   P
Sbjct: 110 VFAAPRPVFASPALAPVAPMAPILRGPAFAYAPSPVLAP 148


>Z70756-8|CAA94795.2|  212|Caenorhabditis elegans Hypothetical
           protein T06E4.9 protein.
          Length = 212

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 14/39 (35%), Positives = 17/39 (43%)
 Frame = +1

Query: 142 VIANPDPFFSQPSNGPSGNYEPISTGPAFVDFNHPNYPP 258
           V A P P F+ P+  P     P+  GPAF     P   P
Sbjct: 123 VFAAPRPVFAAPALAPVAPMAPVLRGPAFAYAPSPVLAP 161


>U41557-6|AAA83307.1|  589|Caenorhabditis elegans Collagen sequence
           x-hybridizingprotein 1 protein.
          Length = 589

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 15/42 (35%), Positives = 18/42 (42%)
 Frame = +1

Query: 100 DNSGVPSDGNSDHVVIANPDPFFSQPSNGPSGNYEPISTGPA 225
           D SG P  G          DP  +QPS GP G + P    P+
Sbjct: 291 DPSGAPPSGGPPGPF----DPSGAQPSGGPPGPFNPSGAPPS 328


>AC006674-12|AAO38617.1|  357|Caenorhabditis elegans Hypothetical
           protein K12H6.6b protein.
          Length = 357

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -3

Query: 130 YCRPMEHHYCPPRELCLRQPWP 65
           +C P+++ Y  P  + L  PWP
Sbjct: 282 HCSPLQYPYSNPYSILLDAPWP 303


>U39993-1|AAA81086.1|  594|Caenorhabditis elegans Hypothetical
           protein F47E1.3 protein.
          Length = 594

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 14/45 (31%), Positives = 18/45 (40%), Gaps = 2/45 (4%)
 Frame = +1

Query: 151 NPDPFFSQP--SNGPSGNYEPISTGPAFVDFNHPNYPPKRYDNPL 279
           +P PF + P  SN         S  P F  +     PP R  +PL
Sbjct: 90  SPPPFMTSPATSNNSVSVARKTSAPPGFAQYEPDTAPPSRSTSPL 134


>AF003141-14|AAM48549.1|  362|Caenorhabditis elegans Hypothetical
           protein W02D3.11b protein.
          Length = 362

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +1

Query: 154 PDPFFSQPSNGPSGNYEPIS 213
           P PF S P   P G Y+P S
Sbjct: 219 PPPFASAPQTAPRGAYDPYS 238


>AF003141-13|AAK21490.1|  549|Caenorhabditis elegans Hypothetical
           protein W02D3.11a protein.
          Length = 549

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +1

Query: 154 PDPFFSQPSNGPSGNYEPIS 213
           P PF S P   P G Y+P S
Sbjct: 219 PPPFASAPQTAPRGAYDPYS 238


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,955,749
Number of Sequences: 27780
Number of extensions: 196846
Number of successful extensions: 550
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 549
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 871571276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)