Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_F24
         (437 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22E12.06c |gmh3||alpha-1,2-galactosyltransferase Gmh3|Schizo...    26   2.9  
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce...    26   2.9  
SPCC576.01c ||SPCPB1C11.04c|sulfonate dioxygenase |Schizosacchar...    25   3.9  
SPBC3B9.12 |||TRAPP complex subunit Trs23 |Schizosaccharomyces p...    25   6.7  
SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|...    25   6.7  
SPAC1687.18c |ssl3||cohesin loading factor Ssl3|Schizosaccharomy...    25   6.7  
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc...    25   6.7  
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe...    24   8.9  
SPBC29B5.02c |isp4||OPT oligopeptide transporter family |Schizos...    24   8.9  

>SPAC22E12.06c |gmh3||alpha-1,2-galactosyltransferase
           Gmh3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 332

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
 Frame = -3

Query: 411 HGFSYSNARTFT*I-AWSNWHTIANSWNSISHIRTNSWLDKRQCFHSGNIALSKHIYLDD 235
           +GF Y N         W+    I  + N   H +   WLD+     +  +++ +HI   D
Sbjct: 124 YGFEYVNVSQMNIPPVWAKMPAIIQTMNKHPHAKWIWWLDQDALILNTELSIQEHILSPD 183


>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 960

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -3

Query: 363 SNWHTIANSWNSIS 322
           S+W T+ N WNS+S
Sbjct: 459 SSWTTVNNDWNSVS 472


>SPCC576.01c ||SPCPB1C11.04c|sulfonate dioxygenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 413

 Score = 25.4 bits (53), Expect = 3.9
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 389 HVPLHKLPGATGIQLLTAGIV 327
           H  LH LPG   +QL+  G+V
Sbjct: 122 HPDLHTLPGVPQVQLIGHGVV 142


>SPBC3B9.12 |||TRAPP complex subunit Trs23 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 132

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 10/13 (76%), Positives = 12/13 (92%)
 Frame = -1

Query: 371 LPGATGIQLLTAG 333
           LPG++GIQLL AG
Sbjct: 51  LPGSSGIQLLEAG 63


>SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 468

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 19/77 (24%), Positives = 29/77 (37%), Gaps = 1/77 (1%)
 Frame = -1

Query: 281 STAVTLHCLNIFTWMTA-VSWGLQKYITTRRQNISNKDTIKA*WXXXXXXXXXXXXXXXL 105
           +TA TL CL +F  +T+ +   +   +     N    D     W                
Sbjct: 374 ATAQTLPCLALFYGITSSIGPSIHGLVAAYVPN----DKPHRYWKFTALLEASATFISYP 429

Query: 104 FQNVFFFICLL*YQFYF 54
           FQ++ F +CL    FYF
Sbjct: 430 FQSLAFIVCLKYCSFYF 446


>SPAC1687.18c |ssl3||cohesin loading factor Ssl3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 559

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = -3

Query: 276 SGNIALSKHIYLDDCSILGFTEIHYNKTSKYIQ*RYNQSLMDSL 145
           +G + + K +YL     L   E+HY +T+K    R +  ++ +L
Sbjct: 369 TGFLGILKGMYLQKRGDLKKAEVHYRETAKNFSFRTDTFIISTL 412


>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 781

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -1

Query: 323 LTLGPIVGWIKDNASTAVTLHCLNIFTW 240
           LT G    +  D  STA+ LHCL   T+
Sbjct: 638 LTPGSYNAFFADMWSTAIVLHCLYFRTY 665


>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 882

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -1

Query: 281 STAVTLHCLNIFTWMTAVSWGLQ 213
           S ++TLH +N+     A+ WG Q
Sbjct: 56  SNSITLHGINLRILTAALEWGSQ 78


>SPBC29B5.02c |isp4||OPT oligopeptide transporter family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 785

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 18/51 (35%), Positives = 25/51 (49%)
 Frame = -1

Query: 407 ALVIPTHVPLHKLPGATGIQLLTAGIVYLTLGPIVGWIKDNASTAVTLHCL 255
           A V PT  P   +P  T I++ T G++Y T+G  V       +  VTL  L
Sbjct: 77  AAVPPTDDP--SMPCNT-IRMWTIGLIYSTVGAAVNMFFSLRNPTVTLSVL 124


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,525,560
Number of Sequences: 5004
Number of extensions: 29226
Number of successful extensions: 88
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)