Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_F24
         (437 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0031 - 40603243-40603491,40603617-40603799,40603896-406040...    28   2.9  
04_01_0422 + 5573833-5574647,5575577-5575692,5576922-5577130,557...    27   6.6  
10_08_0253 - 16196275-16196307,16196425-16196550,16196643-161967...    27   8.7  

>01_07_0031 -
           40603243-40603491,40603617-40603799,40603896-40604084,
           40604244-40604916,40605583-40605737
          Length = 482

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = +1

Query: 277 VEALSFIQPTIG-PNVRYTIPAVSNCMPVAPGNLCKGTCVGIT 402
           VEA  ++   +  PNV   IPA + C+P     +  G  V +T
Sbjct: 234 VEAAKWLHKVVDRPNVYIKIPATAECVPSIKEVIANGISVNVT 276


>04_01_0422 + 5573833-5574647,5575577-5575692,5576922-5577130,
            5579676-5579795,5581616-5581744,5581828-5581953,
            5582945-5583000,5583084-5583183,5585155-5585272,
            5585374-5585583,5585902-5586226,5587094-5587187,
            5588021-5588129,5588246-5588514,5589153-5589280,
            5589983-5590217,5590858-5591046,5591326-5591609,
            5591698-5591890,5592040-5592207,5592429-5592514,
            5594391-5594550
          Length = 1412

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
 Frame = -1

Query: 377  HKLPGATGIQLLTA--GIVYLTLGPIVGWIKDNASTAVTLHCLNI-FTWMTAVS 225
            ++L      QL T   G +  TLGP+V WI  + +  +  H + +   W  A +
Sbjct: 1124 NRLVAGLNAQLRTVRQGNIRSTLGPVVSWINSHGNPQLERHGVRVELGWFQATA 1177


>10_08_0253 -
           16196275-16196307,16196425-16196550,16196643-16196741,
           16196822-16197001,16197090-16197371,16197471-16199141,
           16199257-16199463,16199566-16199700,16199792-16200082,
           16200403-16200621,16200876-16201034,16201120-16201181,
           16201257-16201383,16201460-16201693,16201777-16202003,
           16202163-16202257,16202341-16202468,16202574-16202594,
           16202765-16202921,16203007-16203075,16203228-16203341,
           16203415-16203491,16203576-16203688,16204432-16204507,
           16204592-16204756,16204825-16204952,16205049-16205130,
           16205426-16205548,16205633-16205860,16205933-16206034,
           16206144-16206341,16206581-16206760,16206868-16207020,
           16207690-16207797,16208201-16208355,16208786-16208912,
           16209825-16209914,16209986-16210127,16210303-16210379,
           16210467-16210582,16210638-16210773,16211130-16211198,
           16211279-16211361,16211655-16211720,16211788-16211974,
           16212054-16213547,16213635-16214165,16214234-16214363,
           16214407-16215878,16216359-16216364,16216750-16217055,
           16217364-16217468,16217577-16217772,16217862-16217929,
           16218853-16220631,16221026-16221151,16221604-16221780,
           16221997-16222128,16223461-16223498,16223710-16223788,
           16224175-16224284,16224787-16224935,16225027-16225197,
           16225281-16225552,16226355-16226442,16227942-16228369
          Length = 5157

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = +1

Query: 283 ALSFIQPTIGPNVRYTIPAVSNCMPVAPGNLCKGTCVGITKA 408
           A +  +P + P  RYT+P V   +P+AP  L +   VG+ +A
Sbjct: 47  AAALAEPLLHP--RYTVPVVGCFLPLAPALLDR--AVGLLRA 84


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,852,997
Number of Sequences: 37544
Number of extensions: 162495
Number of successful extensions: 436
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 426
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 436
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 823860276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)