Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_F23
(549 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 29 0.60
SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces ... 29 0.60
SPAC4F8.03 ||SPAC644.01c|SBDS family ribosome maturation protein... 27 2.4
SPAC6B12.09 |trm10||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual 27 2.4
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch... 27 2.4
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p... 25 5.6
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po... 25 5.6
SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|c... 25 7.3
SPCC1235.09 |||histone deacetylase complex subunit|Schizosacchar... 25 7.3
SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces po... 25 9.7
SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase Met9|... 25 9.7
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 28.7 bits (61), Expect = 0.60
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +2
Query: 437 ILQLSSAMILMDSFYQLLMKFIHNSSLIWTLYLRFI 544
++ L+ A L + YQ S +WTLYL F+
Sbjct: 143 VITLTDAHSLFERAYQTCKFHFSKSQCVWTLYLEFL 178
>SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 528
Score = 28.7 bits (61), Expect = 0.60
Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Frame = +1
Query: 91 STQCLWSARK--RVLSLFQDVDQVNVDDEYYKIGKDYDVEANIDNYTNKKAVE 243
+T+ +W + L + + + YYK+ K Y +AN D K VE
Sbjct: 77 ATRAVWEMTDPYKTLGVSKSASASEIKSAYYKLAKQYHPDANPDKAAQDKFVE 129
>SPAC4F8.03 ||SPAC644.01c|SBDS family ribosome maturation
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 246
Score = 26.6 bits (56), Expect = 2.4
Identities = 9/20 (45%), Positives = 16/20 (80%)
Frame = +1
Query: 115 RKRVLSLFQDVDQVNVDDEY 174
R+R+ SL ++++ N+DDEY
Sbjct: 189 RERLRSLADEIEEENIDDEY 208
>SPAC6B12.09 |trm10||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual
Length = 304
Score = 26.6 bits (56), Expect = 2.4
Identities = 8/23 (34%), Positives = 14/23 (60%)
Frame = -3
Query: 274 DNRFCTISRILQQLSYWCSYRCW 206
D + T++++ + LS W YR W
Sbjct: 239 DRKILTVNQVFEILSLWLEYRDW 261
>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1031
Score = 26.6 bits (56), Expect = 2.4
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +1
Query: 139 QDVDQVNVDDEYYKIGKDYDVEANIDN 219
Q+V Q+N +DEY + + D EA IDN
Sbjct: 55 QNVMQMNFEDEYSEFSNE-DDEAEIDN 80
>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 728
Score = 25.4 bits (53), Expect = 5.6
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = +3
Query: 51 VVSPKTYHFKTK-DVDAVFVERQKKGFI 131
V+ PKT+H+K + F + QKK FI
Sbjct: 234 VIEPKTFHYKNGISISMKFDKDQKKLFI 261
>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 851
Score = 25.4 bits (53), Expect = 5.6
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +1
Query: 112 ARKRVLSLFQDVDQVNVDDEYYKIGKDYDVEANIDNYTNKKAVEEFLKLY-RIGY 273
AR LS+ +QV D E+Y+I K+ E D+ + E LK+Y R+ Y
Sbjct: 595 ARSMELSIRHAFEQV--DREWYEIHKEAKSEIEKDSSKPTEDQESKLKVYGRVAY 647
>SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 392
Score = 25.0 bits (52), Expect = 7.3
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +1
Query: 202 EANIDNYTNKKAVEEFLKLYRIGYLPK 282
E + N+T ++A+EE KL LPK
Sbjct: 270 EERLTNFTEEEAIEECKKLNTKSMLPK 296
>SPCC1235.09 |||histone deacetylase complex
subunit|Schizosaccharomyces pombe|chr 3|||Manual
Length = 564
Score = 25.0 bits (52), Expect = 7.3
Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Frame = +1
Query: 409 NEGQFL-YAYYIAVIQRNDTHG 471
N G FL YA++ VI+ D+HG
Sbjct: 274 NSGSFLAYAFFSGVIEIYDSHG 295
>SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 481
Score = 24.6 bits (51), Expect = 9.7
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +1
Query: 109 SARKRVLSLFQDVDQVNVDDEYYKIGKDYDVEANIDNYTNKKAVEEFLK 255
S RK++L+L + D + V+DE Y + D +++ K FLK
Sbjct: 225 SRRKKLLALARKYDIIIVEDEPYYFLQMEDYNGSLNPAQQKCDGSTFLK 273
>SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase
Met9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 603
Score = 24.6 bits (51), Expect = 9.7
Identities = 7/19 (36%), Positives = 13/19 (68%)
Frame = -3
Query: 142 LGKGIKPFFWRSTNTASTS 86
+ +G++P FWR+ N + S
Sbjct: 319 INEGVRPIFWRTRNESYVS 337
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,197,983
Number of Sequences: 5004
Number of extensions: 43081
Number of successful extensions: 120
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -