Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_F23
         (549 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36805| Best HMM Match : GED (HMM E-Value=0.24)                      30   1.1  
SB_26513| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.9  
SB_58364| Best HMM Match : WD40 (HMM E-Value=2.8026e-45)               29   1.9  
SB_10875| Best HMM Match : TIL (HMM E-Value=6.8)                       28   5.8  
SB_54209| Best HMM Match : Baculo_11_kDa (HMM E-Value=8)               27   7.6  

>SB_36805| Best HMM Match : GED (HMM E-Value=0.24)
          Length = 377

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 16/50 (32%), Positives = 27/50 (54%)
 Frame = +1

Query: 139 QDVDQVNVDDEYYKIGKDYDVEANIDNYTNKKAVEEFLKLYRIGYLPKYY 288
           + V QV +  ++ K G+ +D   +I+N  ++K V  +LK Y      KYY
Sbjct: 49  EGVGQVVIHRKFMKPGELFDFPVSIENGKSRKFVSNWLKKYPWLAYSKYY 98


>SB_26513| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1460

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
 Frame = +1

Query: 118 KRVLSLFQDVDQVNVDDEYYKIGKDY-DVEAN-IDNYTNKKAVEEFLKLYRI 267
           +R +SLF+DVD+   D+ Y KI   Y D+  + ID Y    +   F KL ++
Sbjct: 93  ERCISLFKDVDKYKHDERYLKIWIQYADLCTDPIDVYDYMHSQSMFSKLAKL 144


>SB_58364| Best HMM Match : WD40 (HMM E-Value=2.8026e-45)
          Length = 426

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -3

Query: 199 RHSPFQFCSIHHQR*LGLHLGKGIKPFFWRSTNTASTSFV 80
           R SPF+ C+    R +G H G    PF ++  N+  T+FV
Sbjct: 124 RESPFRICTGSEDRTVGFHEG---PPFKFKHLNSEPTNFV 160


>SB_10875| Best HMM Match : TIL (HMM E-Value=6.8)
          Length = 62

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 47  QCGVTENVSLQDKRCRRSVCG 109
           +C + +NV   D+ CRRS CG
Sbjct: 29  KCHMEKNVIFDDRACRRSRCG 49


>SB_54209| Best HMM Match : Baculo_11_kDa (HMM E-Value=8)
          Length = 337

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 14/54 (25%), Positives = 28/54 (51%)
 Frame = +1

Query: 127 LSLFQDVDQVNVDDEYYKIGKDYDVEANIDNYTNKKAVEEFLKLYRIGYLPKYY 288
           ++ +   D++   +  +K G+ +D   +I+N  ++K V  +LK Y      KYY
Sbjct: 24  IASYSPQDKLKFIENVWKPGELFDFRVSIENGKSRKFVLNWLKKYPWLAYSKYY 77


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,327,895
Number of Sequences: 59808
Number of extensions: 327723
Number of successful extensions: 994
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 943
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 993
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)