Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_F23
(549 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of e... 29 1.7
U41994-2|AAO38634.1| 154|Caenorhabditis elegans Rnase h protein... 29 2.9
U41994-1|AAO91711.1| 155|Caenorhabditis elegans Rnase h protein... 29 2.9
AL132865-13|CAB60609.1| 496|Caenorhabditis elegans Hypothetical... 29 2.9
Z54236-7|CAA90982.1| 1471|Caenorhabditis elegans Hypothetical pr... 28 3.9
U53155-4|AAC48265.1| 619|Caenorhabditis elegans Hypothetical pr... 28 3.9
AF047657-7|AAK18943.1| 424|Caenorhabditis elegans Hypothetical ... 28 5.1
U64608-3|AAB04593.2| 349|Caenorhabditis elegans Serpentine rece... 27 8.9
AF099919-4|AAC68791.1| 230|Caenorhabditis elegans Hypothetical ... 27 8.9
>AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of efl-1
mutant phenotypeprotein 1 protein.
Length = 4177
Score = 29.5 bits (63), Expect = 1.7
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 6/58 (10%)
Frame = +1
Query: 130 SLFQDVDQVNVDDEYYKIGKDYDVEANIDNY----TNKKAVEEFLKLYR--IGYLPKY 285
S+ DV ++++DD+Y+ +G +D + D + AV F L+R +LP Y
Sbjct: 2542 SMEDDVQRLDLDDDYFDMGGPFDAQRMDDMIFPPSFGRPAVTSFADLFRDDFDFLPPY 2599
>U41994-2|AAO38634.1| 154|Caenorhabditis elegans Rnase h protein
1.0, isoform b protein.
Length = 154
Score = 28.7 bits (61), Expect = 2.9
Identities = 25/82 (30%), Positives = 39/82 (47%)
Frame = +1
Query: 118 KRVLSLFQDVDQVNVDDEYYKIGKDYDVEANIDNYTNKKAVEEFLKLYRIGYLPKYYEFS 297
K+V S F + + D YY + + + V +TN V+E +K Y P + ++S
Sbjct: 53 KKVESTFPE----STHDTYYAVARGHSVGV----FTNYNEVKEHIKNYP---QPLHKKWS 101
Query: 298 IFYQKLREEAIALFHLFYYAKD 363
EEAIA FH +Y K+
Sbjct: 102 TL-----EEAIAYFHKYYEGKE 118
>U41994-1|AAO91711.1| 155|Caenorhabditis elegans Rnase h protein
1.0, isoform a protein.
Length = 155
Score = 28.7 bits (61), Expect = 2.9
Identities = 25/82 (30%), Positives = 39/82 (47%)
Frame = +1
Query: 118 KRVLSLFQDVDQVNVDDEYYKIGKDYDVEANIDNYTNKKAVEEFLKLYRIGYLPKYYEFS 297
K+V S F + + D YY + + + V +TN V+E +K Y P + ++S
Sbjct: 53 KKVESTFPE----STHDTYYAVARGHSVGV----FTNYNEVKEHIKNYP---QPLHKKWS 101
Query: 298 IFYQKLREEAIALFHLFYYAKD 363
EEAIA FH +Y K+
Sbjct: 102 TL-----EEAIAYFHKYYEGKE 118
>AL132865-13|CAB60609.1| 496|Caenorhabditis elegans Hypothetical
protein Y62E10A.16 protein.
Length = 496
Score = 28.7 bits (61), Expect = 2.9
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +2
Query: 323 RLLLFSTCSTMLKTLKPSTRVPLSLV 400
R+ F TCS +KT+K +PLS+V
Sbjct: 290 RIEQFLTCSETIKTVKSDALIPLSIV 315
>Z54236-7|CAA90982.1| 1471|Caenorhabditis elegans Hypothetical
protein C27B7.7 protein.
Length = 1471
Score = 28.3 bits (60), Expect = 3.9
Identities = 13/56 (23%), Positives = 29/56 (51%)
Frame = +2
Query: 362 TLKPSTRVPLSLVCT*MRDSSCTHIILQLSSAMILMDSFYQLLMKFIHNSSLIWTL 529
T P T PLS+ CT ++ S ++ +++ + +DS + ++ +H + T+
Sbjct: 256 TADPQTNEPLSITCT-VKSVSKASVLWKVNGIKVSVDSSFYTVVTSVHEDFIESTI 310
>U53155-4|AAC48265.1| 619|Caenorhabditis elegans Hypothetical
protein ZC513.3 protein.
Length = 619
Score = 28.3 bits (60), Expect = 3.9
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = -3
Query: 298 WRTHSTWEDN-RFCTISRILQQLSYWCSYRC 209
WRT + E + +F +SRIL+Q + W S C
Sbjct: 542 WRTFAIREKSEKFPNVSRILRQKTSWVSKNC 572
>AF047657-7|AAK18943.1| 424|Caenorhabditis elegans Hypothetical
protein F37B4.7 protein.
Length = 424
Score = 27.9 bits (59), Expect = 5.1
Identities = 22/50 (44%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +1
Query: 298 IFYQKLREEAIALFHLFYYAKDFETFYKSA-AFARVHLNEGQFLYAYYIA 444
+FY IA F + Y K +T YKSA AF R L G+FL AY +A
Sbjct: 101 VFYGWATATEIAYF-AYIYVKVPKTEYKSATAFTRAALLVGRFL-AYALA 148
>U64608-3|AAB04593.2| 349|Caenorhabditis elegans Serpentine
receptor, class v protein7 protein.
Length = 349
Score = 27.1 bits (57), Expect = 8.9
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Frame = -1
Query: 396 SESGTLVEGFKVF-SIVEQVEKSNSLFP*LLVEDGELIVLGKITDSVQFQEFFNSFLIGV 220
+ + TL E F S+V V S F +L+ E+++L + ++V F+ F IG+
Sbjct: 2 ASNATLPEWFDPLESVVSTVFMLGS-FVTILLYFVEILILVTLRNTVYKGMFYQIFTIGI 60
Query: 219 VIDV 208
+IDV
Sbjct: 61 IIDV 64
>AF099919-4|AAC68791.1| 230|Caenorhabditis elegans Hypothetical
protein F40G9.12 protein.
Length = 230
Score = 27.1 bits (57), Expect = 8.9
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +2
Query: 17 SSGAHCPRAIQCGVT 61
+SG HCPR + CG T
Sbjct: 28 TSGDHCPRVLSCGHT 42
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,116,464
Number of Sequences: 27780
Number of extensions: 240598
Number of successful extensions: 677
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 677
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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