Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_F22
         (597 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30D11.10 |rad22||DNA repair protein Rad22|Schizosaccharomyce...    27   2.7  
SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces p...    26   4.8  
SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr 1|||M...    25   6.3  
SPCC1739.10 |mug33||conserved fungal protein|Schizosaccharomyces...    25   6.3  
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c...    25   6.3  
SPAC4A8.06c |||esterase/lipase |Schizosaccharomyces pombe|chr 1|...    25   6.3  

>SPAC30D11.10 |rad22||DNA repair protein Rad22|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 469

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +3

Query: 147 RAGEWDTQSTKEIYPYQDREVESVAIHKD 233
           RA E + + T+EI  Y D E++++ +  D
Sbjct: 223 RAAELNDEQTREIEMYADEELDNIFVEDD 251


>SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 599

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -2

Query: 563 RLPCKCPCRVTSSAHEGLVQVEQASQYRCLKLI 465
           R+ C   CR+T+   +GL  V+Q      L LI
Sbjct: 265 RVFCSRTCRITTIQRDGLESVKQLGTQNVLDLI 297


>SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 757

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -1

Query: 495 SFPVSLSEAYSYMCSDLPRELPPFLIWSG 409
           S PV+++E Y Y  + + REL P + W G
Sbjct: 147 SEPVNVNEDYLYSVNVVSRELSP-IYWDG 174


>SPCC1739.10 |mug33||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 336

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
 Frame = -1

Query: 444 PRELPPFLIWSGDDLPFR---TCPSPNPWQCNVCQA 346
           P E  P   +   + PF+   + P+PNPW  N  QA
Sbjct: 287 PAEQAPENPFRDPENPFKDPASAPAPNPWSINDVQA 322


>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1274

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +3

Query: 30  PVINGDTKIEIYVSGGSL 83
           P ++GDT + IY  GG++
Sbjct: 477 PTLDGDTGVSIYAPGGAI 494


>SPAC4A8.06c |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 578

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +2

Query: 11  GHSQDGPGNQW*YKN*NIRQWWI 79
           G  Q G  N W Y+   ++ WWI
Sbjct: 103 GIKQFGGSNWWLYRKSPLKSWWI 125


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,893,749
Number of Sequences: 5004
Number of extensions: 65914
Number of successful extensions: 154
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)